1VBK,3V97,3G8Q


Conserved Protein Domain Family
THUMP

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cd11688: THUMP 
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THUMP domain, predicted to bind RNA
The THUMP domain is named after THioUridine synthases, RNA Methyltransferases and Pseudo-uridine synthases. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets.
Statistics
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PSSM-Id: 212583
Aligned: 5 rows
Threshold Bit Score: 134.538
Created: 6-Apr-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
1VBK_B         4 VIVRYGeigtksrqtrswfekiLMNNIREALvteev-------------------------------------------- 39  Pyrococcus hori...
YP_004484308   3 FIIKTQkgy----------egiAANYLKEEVed----------------------------------------------- 25  Methanotorris i...
3V97_A         5 LFASTArgl----------eelLKTELENLGav----------------------------------------------- 27  Escherichia col...
3G8Q_A       122 VLLTFGgnpyl-------teedVAARVYCLLtgrg--------------------------------------------- 149 Methanopyrus ka...
EGX49621      20 IFATCDkgr----------esrCVAELYRLFeeyadklygpedagtadsadnqnpnepedkpdvddieaaiaaeisgina 89  Arthrobotrys ol...
1VBK_B        40 -------pykeIFSr----hGRIIVKtnsp--keaANVLVRvf-------------giVSISPA-MEVEa-sLEKINRTA 91  Pyrococcus hori...
YP_004484308  26 ---------ikVHItp---hGYSGIViv-----esEDDITDkalk---------ipeiERVLKVlFEVPa-dLEKIVSLA 78  Methanotorris i...
3V97_A        28 ----------eCQVv----qGGVHFKgdt----rlVYQSLMwsr------------laSRIMLPlGECKvysDLDLYLGV 77  Escherichia col...
3G8Q_A       150 -------fdadIAPapenlsGRVEIMvtrgdpdeaVELLKEel-------------pvFRIRRFlISGEf-dRDELRERI 208 Methanopyrus ka...
EGX49621      90 kgkakdnritsIKLdt---pCLIFFHtke---pvdPAELVGfifkdieetkrrqtrftNRLTPItKTCKa-nITDLEETA 162 Arthrobotrys ol...
1VBK_B        92 LLMFrkkakevgkerPKFRVTARRItkefplDSLEIQAKVGEYILNnen------ceVDLKnydIEIGIEIMqgKAYIY 164 Pyrococcus horik...
YP_004484308  79 DKIAehi-----negESFAVETKRRgkh-nfSSVDVNIVLGAKIKDltn------aeVNLDypdKVVYVEIIkdIAYIC 145 Methanotorris ig...
3V97_A        78 QAINwtem---fnpgATFAVHFSGLndt-irNSQYGAMKVKDAIVDaftrknlprpnVDRDapdIRVNVWLHkeTASIA 152 Escherichia coli...
3G8Q_A       209 LEDIepr------ilDPFAVRARIAragafsSSREAEVFIGDVLTSvg-------reVNLNdprTVVTVDVLgpRVSVG 274 Methanopyrus kan...
EGX49621     163 HEVLkphfh-egqkgVKFAIRPNLRdhr-vlNRDEIIKSVARIVGPdh--------kVDLKnydLLIIVEVWrnICGVS 231 Arthrobotrys oli...
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