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Report for CCDS56680.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
56680.1 |
Public |
Mus musculus |
10 |
Syne1 |
23 |
108 |
98 |
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Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 56680.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000041639.6 |
ENSMUSP00000039440.5 |
Accepted |
alive |
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NCBI |
NM_153399.2 |
NP_700448.2 |
Updated |
not alive |
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NCBI |
NM_153399.3 |
NP_700448.2 |
Accepted |
alive |
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RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_700448.2 |
1431 |
Q6ZWR6-5 |
1431 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 56680.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4296 nt): ATGGCAACCTCCAGAGCATCTTCCCGGTCCCATCGGGACATCACCAATGTGATGCAGAGGCTACAAGATG AACAAGAGATTGTACAGAAACGTACCTTCACAAAATGGATCAATTCCCATCTGGCCAAGCGGAAGCCTCC CATGGTGGTGGATGACCTTTTTGAAGACATGAAAGATGGCATCAAGCTGCTTGCTTTACTGGAGGTCCTG TCTGGGCAGAAACTGCCTTGTGAACAAGGACACCGGGTGAAGCGTATTCATGCTGTGGCTAACATTGGCA CCGCACTCAAATTCCTTGAAGGAAGGAAGTCCATGTACAGAGGATCACCGATTAAATTAGTCAACATTAA TGCTACTGATATTGCTGATGGCCGACCATCAATCGTTCTTGGGCTGATGTGGACCATTATCCTGTATTTC CAGATAGAAGAGTTGACCAGCAACCTACCACAGCTGCAGTCTCTATCCAGCAGTGCTTCCTCTGTGGACA GCATGGTCAGCACCGAGACTGCCAGCCCACCCAGCAAACGAAAGGTGGCTGCCAAGATCCAGGGAAATGC CAAGAAAACTCTATTAAAGTGGGTCCAGCACACAGCAGGCAAGCAGATGGGAATAGAAGTGAAAGACTTC GGGAAGAGTTGGAGAACTGGGTTGGCCTTTCATTCAGTCATCCACGCTATCCAGCCTGAGCTGGTGGACC TGGAGAAGGTGAAGACTAGATCTAACAGGGAAAACCTGGAGGACGCCTTCACGATCGCTGAAACACAGCT AGGCATCCCCAGACTGCTTGATCCCGAAGATGTGGATGTGGACAAGCCAGATGAAAAGTCTATCATGACT TACGTGGCCCAGTTTCTAACACAATACCCTGACATTCATGGTGCAGGCTGTGATGGGCAAGAGGATGATA GGGATGACAGACTAATTTTGAAGGAAACAAAAGTTTGGATAGAACAATTTGAGAGAGATTTTACAAGGGC ACAGATGACCGAATCAAGTCTGCAGGACAAATATCAGGCATTTAAGCACTTCAGAGTTCAATATGAAATG AAAAGGAAACAAGTGGAGCATATAATACAGCCATTGCAAAGAGATGGCAAACTGACGCTCGACCAAGCCT TGGTCAAGCAGTGCTGGGAGAGAGTATCATCCCGGCTCTTCGATTGGCATATACAGCTGGATAAATCTCT CCCTGCACCTCTGGGCACTATAGGTGCTTGGCTATACAGGGCAGAAGTGGCCCTGAGAGAAGAGATCACC ATTCAGCAGGTTCACGAGGAGACAGCAAACACAATCCAACGGAAACTTGAGCAACATAAGGATCTGCTTC AAAATACAGATGCCCACAAAAGGGCGTTCCATGAAATCTACCAGACCAGGTCTGTCAATGGGATCCCGAT GCCTCCTGATCAGCTAGAGGACATGGCTGAGAGGTTTCATTTTGTGTCCTCCACATCCGAGCTGCACTTA ATGAAAATGGAGTTTCTCGAACTGAAGTACCGTCTGCTGTCCCTGCTGGTCCTCGCTGAGTCAAAGCTGA AGTCCTGGATCATCAAGTATGGGAGGCGAGAGTCTGTGGAGCTGCTGCTGCAAAGCTATATCTCTTTTAT AGAAAACAGCAAGTTCTTTGAACAGTATGAAGTGACATACCAGATCCTGAAACAGACAGCTGACATATAC GTCAAAGCAGAGGGCTCAGTGGAGGAAGCTGAGAACGTGATGAAATTCATGAGTGAAGCCACTGCCCAGT GGAGGAACCTCTCCGTGGAAGTGCGGAGTGTACGGAGCATGCTGGAGGAGGTGATCTCCAACTGGGATCG CTATGGTGATACCGTGGCTAGTCTCCAAGCCTGGCTAGAAGATGCAGAGAAAATGCTAAGCCAATCAGAA CATGCCAAGAAGGATTTTTTTCGAAATCTGCCTCACTGGATTCAGCAGCACACAGCCATGAACGATGCCG GGAATTTCCTGATTGAAACCTGTGATGAGATTGTTTCTCGAGACCTTAAACAGCAGTTGCTCTTATTGAA CGGTCGATGGAGGGAGCTCTTCATGGAAGTCAAGCAATATGCAAGAGCAGACGAGATGGACAGAATGAAG AAAGAGTATATAGACGTCACTACCACCCTCTTTGGTTTTGCAACTGAAGCCCACAGGAAACTCTCTGAGC CTTTAGAAGTCTCTTTTATCAATGTCAAGTTATTAATTCAAGACTTGGAGGATCTGGAGAAGAGGGTGCC TGTGATGGATGCTCAGTACAAGATGATTGCCAAGAAGGCACATCTCTTTGCCAAAGAAAGTCCCCAAGAA GAAGCGAATGAAATGCTTACAACCATGTCCAAGCTCAAAGAACAGCTCTCCAAGGTCAAAGAATGTTGCT CCCCACTGTTGTACGAGGCCCAGCAACTGACGGTTCCTTTGGAAGAACTGGAGACGCAAATCACGTCCTT CTATGACTCCCTTGGAAAAATCAATGAGATTCTATCAGTTCTTGAGCAAGAAGCACAATCTAGCACTCTT TTTAAGCAAAAACACCAGGAACTGTTAGCTTCTCAAGAGAACTGTAAGAAATCCTTGACACTCATAGAGA AGGGCAGCCAAAGTGTTCAGAAGCTGGTGACCTCGAGCCAGGCACGAAAGCCCTGGGATCACACAAAACT GCAGAAGCAGATAGCAGATGTCCATCATGCATTCCAGAGCATGATCAAGAAAACTGGAGACTGGAAGAAG CACGTGGAAGCCAACAGCCGTTTGATGAAGAAATTTGAGGAGTCTCGGGCCGAGTTGGAGAAGGTGCTTA GGGTTGCTCAGGAGGGCCTAGAGGAGAAGGGGGACCCCGAGGAACTCCTTCGGAGACACACGGAGTTCTT CAGCCAACTGGACCAGAGGGTCCTCAATGCTTTCCTAAAAGCCTGTGATGAGCTAACTGACATCCTCCCA GAGCAGGAGCAACAAGGCCTACAGGAGGCTGTTCGAAAGCTACACAAACAGTGGAAGGATCTTCAGGGAG AAGCGCCTTATCATTTGCTCCATCTGAAAATCGCTGTGGAGAAAGACAGATTCTCAGCTGCTGTGGAAGA GTGCAGAGCTGAGCTGGAGCAAGAGACCAAGCTGGCTCCTCAAGAAGGCAGCGAGAAGATCATAAAGGAA CACAGGGTTTTCTTCAGTGACAAGGGTCCTCACCATCTCTGTGAGAAGAGACTACAGCTCATAGAGGAAT TGTGTGGGAAACTCCCCGTCCAGGACCCAGTAAGGGACACATGTGGAGCCTGTCACACAGCTCTCAAAGA GCTCAAAGCTTCCATTGACAACACTTACACAATGCTCGTGGATGACCCAGACAAGTGGAAGGACTATACC AGCAGGTTTTCTGAGTTCTCCTCTTGGGTGTCTGCAAAGAAGGCATGTTTGAAGAAAATCAAGGATGAGC CCATTGACACTGGCAACCACGACGAGGTTAAGCATATGGTGGATGAGATCAGAAATGACATTACCAAGAA AGGAGAGAGTCTCAGCTGGCTGAAATCCAGGCTTAAGTATTTGATTGATATTTCTTCAGAGAATGAAGCC CAAAAGCGAGGAGATGAGCTGGCAGAATTATCAAGCTCTTTCAAGGCTCTTGTGGCATTACTGTCAGAGG TCGAAAAGCTTCTAAGCAACTTTGGAGAATGCGTTCAGTACAAGGAAATCGTGAAAAGTTCCCTTGAGGG GTTGATATCGGGCCCCCAAGAAAGCAAGGAAGAGGCTGAGATGATCCTGGACTCGAAAAATCTGCTTGAG GCACAGCAGTTGCTCCTGCATCACCAGCAAAAGACAAAGATGATCTCAGCAAAGAAGAGAGACCTCCAGG AGCAGATGGAGCAGGCACAGCAGGGTGGGCAGGCAGGCCCAGGTCAAGAGGAGCTGCGGAAGCTGGAGAG CACCCTCACAGGCCTGGAGCAGAGCAGGGAGAGGCAGGAACGTCGCATCCAGGTCAGCTTGAGGAAATGG GAGCGGTTTGAGACAAACAAGGAGACGGTGGTCAGATATCTTTTCCAGACAGGTTCCAGCCACGAACGCT TCTTGAGCTTCAGCAGTTTGGAAAGCCTGTCATCAGAGTTGGAGCAGACAAAGGAGTTTTCTAAGAGGAC GGAAAGCATTGCCACCCAGGCTGAGAACCTGGTCAAGGAAGCCGCAGAGTTGCCGCTGGGGCCCAGGAAT AAGCGTGTGCTTCAGCGGCAGGCCAAGTCAATCAAGGAGCAGGTCACAACCCTGGAAGACACGCTTGAAG AAGAGTATGTGCTTCACCACTTCTAA
Translation (1431 aa): MATSRASSRSHRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGIKLLALLEVL SGQKLPCEQGHRVKRIHAVANIGTALKFLEGRKSMYRGSPIKLVNINATDIADGRPSIVLGLMWTIILYF QIEELTSNLPQLQSLSSSASSVDSMVSTETASPPSKRKVAAKIQGNAKKTLLKWVQHTAGKQMGIEVKDF GKSWRTGLAFHSVIHAIQPELVDLEKVKTRSNRENLEDAFTIAETQLGIPRLLDPEDVDVDKPDEKSIMT YVAQFLTQYPDIHGAGCDGQEDDRDDRLILKETKVWIEQFERDFTRAQMTESSLQDKYQAFKHFRVQYEM KRKQVEHIIQPLQRDGKLTLDQALVKQCWERVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEIT IQQVHEETANTIQRKLEQHKDLLQNTDAHKRAFHEIYQTRSVNGIPMPPDQLEDMAERFHFVSSTSELHL MKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRESVELLLQSYISFIENSKFFEQYEVTYQILKQTADIY VKAEGSVEEAENVMKFMSEATAQWRNLSVEVRSVRSMLEEVISNWDRYGDTVASLQAWLEDAEKMLSQSE HAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEIVSRDLKQQLLLLNGRWRELFMEVKQYARADEMDRMK KEYIDVTTTLFGFATEAHRKLSEPLEVSFINVKLLIQDLEDLEKRVPVMDAQYKMIAKKAHLFAKESPQE EANEMLTTMSKLKEQLSKVKECCSPLLYEAQQLTVPLEELETQITSFYDSLGKINEILSVLEQEAQSSTL FKQKHQELLASQENCKKSLTLIEKGSQSVQKLVTSSQARKPWDHTKLQKQIADVHHAFQSMIKKTGDWKK HVEANSRLMKKFEESRAELEKVLRVAQEGLEEKGDPEELLRRHTEFFSQLDQRVLNAFLKACDELTDILP EQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIAVEKDRFSAAVEECRAELEQETKLAPQEGSEKIIKE HRVFFSDKGPHHLCEKRLQLIEELCGKLPVQDPVRDTCGACHTALKELKASIDNTYTMLVDDPDKWKDYT SRFSEFSSWVSAKKACLKKIKDEPIDTGNHDEVKHMVDEIRNDITKKGESLSWLKSRLKYLIDISSENEA QKRGDELAELSSSFKALVALLSEVEKLLSNFGECVQYKEIVKSSLEGLISGPQESKEEAEMILDSKNLLE AQQLLLHHQQKTKMISAKKRDLQEQMEQAQQGGQAGPGQEELRKLESTLTGLEQSRERQERRIQVSLRKW ERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTESIATQAENLVKEAAELPLGPRN KRVLQRQAKSIKEQVTTLEDTLEEEYVLHHF
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