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Report for CCDS38209.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38209.2 Public Mus musculus 2 Pla2g4b 23 108 98 CCDS HistoryNCBI Gene:211429Re-query CCDS DB by CCDS ID:38209.2Re-query CCDS DB by GeneID:211429See the combined annotation on chromosome 2 in Sequence Viewer

Public Note for CCDS 38209.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation and transcript data.

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)


Attributes
Inferred exon combination

Sequence IDs included in CCDS 38209.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000126150.1 ENSMUSP00000118458.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000126150.1Link to Ensembl Protein Viewer:ENSMUSP00000118458.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000126150Re-query CCDS DB by Protein ID:ENSMUSP00000118458
Original member Current member NCBI NM_145378.4 NP_663353.3 Accepted alive Link to Nucleotide Sequence:NM_145378.4Link to Protein Sequence:NP_663353.3Re-query CCDS DB by Nucleotide ID:NM_145378Re-query CCDS DB by Protein ID:NP_663353Link to BLAST:NP_663353.3

Chromosomal Locations for CCDS 38209.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 120033498 120033506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120034574 120034670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120034920 120035056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120035196 120035324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120035585 120035625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120035805 120035847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120036096 120036150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120036389 120036519 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120036747 120036830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120037058 120037095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120037738 120037873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120038496 120038632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120038863 120039085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120039217 120039334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120039629 120039766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120039858 120039962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120040143 120040322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120040478 120040644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120041121 120041307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 120041395 120041615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2376 nt):
ATGGCTCTGCAAACCTGCCCAGTCTACATGCAGGCAAAGGTGCCAGAGACATGCCTGCTCACTGTACGCG
TC
CTCCGGGCCAGTGGCTTGCCTTCCAAGGACCTAGTAACCTCCTCTGACTGCTATGTGACTCTGAACCT
G
CCCACGGCTTCCAGCCACACGCTCCAGACACGCACAGTCAAGAACAGCCGAAACCCTGTCTGGAATCAG
AAC
TTCCACTTCCGGATCCATAGGCAGCTCAAGAATGTTATGGAACTGAAAGTCTTTGACCATGACCTGG
TG
ACCAGAGATGACCCAGTATTGTCAGTGCTGTTTGACGTGGGGACCCTGCAAATTGGGACTCAGCGCCA
G
AGCTTCTCCTTGGGTACTCAGGAGAAAGGGTGCTTAGAAGTTGAGTTTCGGCTACAGACTCTGACAGAC
TGT
GAGGAACAGCTCATCAGCAATGGCATCGTGGTGGCCCGGGAACTCTCCTGCTTGCACGTTGAACTGA
AG
AGGACAGGAGATCCAAAGAGGTCAGAGCGCAAAGTTCAACTTGTGGTTGCTGGGGCCTGTGAGGGCCC
A
CAGGATGCCTCTGCGGGCACTGGATCTTTCCACTTCCATTATCCAGCCTGCTGGGAGCAAGAGCTGAAT
GTT
CATCTGCAGGATGACCCCCATGAGCAGCTGAAGGTGCCACTACGAACTCTACCCTCCTCGCAGCTGG
TG
AGACTTGTCTTCCCCACGTCCCAGGAGCCACTGATGAGGCTGGAACTCAAGAAGGAAGAAGGACCAAA
G
GAGCTGGCTGTGCGGCTGGGCTGTGGGCCCTGCCCTGAGGAACAGGCCTTCCTAAGCAAGAGGAAGCAG
GTG
GTGGCTGCCGCGCTGAAAAAGGCCTTACAGCTGGACCAAGACCTGCACGAGGATGAGATCCCCGTGA
TT
GCCGTGATGGCCACTGGTGGTGGGATCCGGGCCATGACGTCTTTGTATGGGCAGCTGGCCGGCCTGCA
G
GAGCTCGGCCTTCTCGACTGCATCTCCTATATCACGGGGGCTTCAGGATCCACCTGGGCACTGGCCAAC
CTC
TATGAGGACCCAGAGTGGTCGCAGAAGGACCTGGCAGGGCCCACTGAGGTGCTGAAGACACAGGTGA
CA
AAGAGCAAGCTGGGTGCGTTGGCCCCTAGCCAACTTTGGCGGTACCGGCAAGAGCTGGCTGAGCGTGC
T
CGCCTGGGCCACCCAACCTGCTTCACCAACTTGTGGGCCCTCATTAATGAGGCCTTGCTGCACGACAAG
CCC
CATGAACACAAACTCTCAGATCAACGAGAGGCCCTGAGTCGAGGCCAGAACCCTCTGCCTATCTATT
GT
GCCCTCAACAGCAAGGAGCAGGGCCTGAGTACCTTTGACTTTGGGGAGTGGTGTGAGTTCTCTCCATA
T
GAAGTCGGCTTCCCCAAGTATGGAGCCTTCATCTCCTCCGAGCTCTTTGGCTCGGAGTTCTTTATGGGG
CGG
CTGGTGAAGCAGCTTCCCGAGTCCCGCATCTGCTTCCTGGAAGGCATCTGGAGCAATCTGTTTGCGG
CC
AGCCTCCAAGACAGCTTGTACTGGTCCTCAGAACCCAGCCAGTTCTGGGACCGCTGGGCGCAGGATCA
G
GCCAACCTGGACAAAGAGCAGGTCCCCCATCTGAAGATAGCAGAGCCACCGACAATGGCTGGCAGGATC
GCC
GAGCTCTTCACTGACCTCCTGACAAAGCGTCCCCTCGCCCACGCCACCCACAACTTCACGCGAGGCC
TC
CATTTCCACAAGGACTATTTCCAGAACTCTCACTTCTCTGCCTGGAAAGCTTCCAAACTGGACAGGCT
C
CCCAACCAGCTGACACCCACTGAGCCCCACCTCTGCCTCCTGGATGTTGGCTATCTCATCAATACTAGC
TGC
CCACCCCTCCTGCAGCCAACACGGGATGTGGACCTCATCTTGTCACTGGACTACAACCTCTACGGAG
CC
TTTCAGCAGCTGCAGCTTCTGAGCCGGTTCTGCCAGGAGCAGGGCATCCCTTTCCCATCCATCTCACC
C
AGCCCCGAGGAGCAGCGGCAGCCTCAGGAGTGCCATCTGTTCTGTGACCCAGCCCAGCCCGAAGCCCCG
GCT
GTGCTGCACTTCCCTTTGGTCAATGACTCCTTCCAAGACTACTCTGCCCCTGGGGTGCCACGGACAT
CG
GAGGAGAAGGCAGCTGGGGAGGTGAATCTGTCTTCTTCTGACTCCCCATACCACTACACAAAAGTGAC
C
TACAGCCAGGAAGATGTGGACAAGCTGTTACGGCTGACGCATTACAACATCTGCAACAACCAGGATCGG
CTG
CGGGAGGCCATGCACCAGGCCGTGCAGCGGCGGAGAAAGCGCAAACAGTTTAGGCCGGAGTGA


Translation (791 aa):
MALQTCPVYMQAKVPETCLLTVRVLRASGLPSKDLVTSSDCYVTLNLPTASSHTLQTRTVKNSRNPVWNQ
N
FHFRIHRQLK
NVMELKVFDHDLVTRDDPVLSVLFDVGTLQIGTQRQSFSLGTQEKGCLEVEFRLQTLTD
C
EEQLISNGIVV
ARELSCLHVELKRTGDPKRSERKVQLVVAGACEGPQDASAGTGSFHFHYPACWEQELN
V
HLQ
DDPHEQLKVPLRTLPSSQLVRLVFPTSQEPLMRLELKKEEGPKELAVRLGCGPCPEEQAFLSKRKQ
V
VAAALKKALQLDQDLHEDE
IPVIAVMATGGGIRAMTSLYGQLAGLQELGLLDCISYITGASGSTWALAN
L
YEDPEWSQKDLAGPTEVLKTQVTKSKLGALAPSQLWRYRQELAERARLGHPTCFTNLWALINEALLHDK

P
HEHKLSDQREALSRGQNPLPIYCALNSKEQGLSTFDFG
EWCEFSPYEVGFPKYGAFISSELFGSEFFMG
R
LVKQLPESRICFLE
GIWSNLFAASLQDSLYWSSEPSQFWDRWAQDQANLDKEQVPHLKIAEPPTMAGRI
A
ELFTDLLTKRPLAHATHNFTRGLHFHKDYFQNSHFSAWK
ASKLDRLPNQLTPTEPHLCLLDVGYLINTS
C
PPLLQPTRDVDLILSLDYNLYGAFQ
QLQLLSRFCQEQGIPFPSISPSPEEQRQPQECHLFCDPAQPEAP
A
VLHFPLVNDSFQDYSAP
GVPRTSEEKAAGEVNLSSSDSPYHYTKVTYSQEDVDKLLRLTHYNICNNQDR
L
REAMHQAVQRRRKRKQFRPE




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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