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Report for CCDS37531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37531.1 Public Mus musculus 17 Srpk1 23 108 98 CCDS HistoryNCBI Gene:20815Re-query CCDS DB by CCDS ID:37531.1Re-query CCDS DB by GeneID:20815See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130643.8 ENSMUSP00000116259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130643.8Link to Ensembl Protein Viewer:ENSMUSP00000116259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130643Re-query CCDS DB by Protein ID:ENSMUSP00000116259
Original member Current member NCBI NM_016795.4 NP_058075.2 Accepted alive Link to Nucleotide Sequence:NM_016795.4Link to Protein Sequence:NP_058075.2Re-query CCDS DB by Nucleotide ID:NM_016795Re-query CCDS DB by Protein ID:NP_058075Link to BLAST:NP_058075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058075.2 648 O70551 648 100% 0 0

Chromosomal Locations for CCDS 37531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28590057 28590241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28591201 28591293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28592218 28592287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28594170 28594277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28598902 28599002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28599471 28599869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28600243 28600456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28600869 28600894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28602688 28602853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28603438 28603544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28605299 28605386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28606307 28606394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28607084 28607192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28608646 28608764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28621977 28622037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28622400 28622412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGAGCGGAAAGTGCTCGCGCTCCAGGCCCGAAAGAAAAGGACCAAGGCCAAGAAGGACAAAGCCCAAA
GG
AAGCCTGAAACTCAGCACCGAGGCTCTGCACCCCACTCCGAGAGCGACATCCCAGAGCAGGAGGAGGA
G
ATTCTAGGGTCTGACGATGACGAGCAGGAAGACCCCAATGACTACTGTAAAGGAGGTTATCATCTTGTG
AAA
ATTGGAGATCTATTTAACGGGAGATACCATGTGATTCGAAAATTGGGCTGGGGACACTTTTCCACAG
TG
TGGTTATCATGGGATATTCAGGGAAAGAAGTTTGTAGCAATGAAAGTAGTTAAAAGTGCTGAGCATTA
C
ACAGAAACAGCACTAGATGAAATCCGGCTGCTGAAATCGGTTCGCAACTCAGACCCGAATGATCCAAAT
GGA
GAAATGGTTGTTCAACTACTAGATGACTTTAAAATATCAGGCGTTAATGGAACACATATCTGCATGG
TG
TTTGAGGTTTTGGGGCATCATCTACTCAAGTGGATCATCAAGTCCAACTATCAGGGGCTTCCGCTGCC
T
TGTGTCAAAAAAATTATTCAGCAAGTGCTACAGGGCCTGGATTACTTACACACCAAGTGCCGGATCATC
CAC
ACGGACATCAAACCAGAGAACATCTTGTTGTCTGTGAATGAGCAGTACATTCGAAGGCTGGCTGCAG
AG
GCCACAGAGTGGCAGCGCTCAGGAGCTCCCCCACCATCGGGGTCTGCAGTCAGCACTGCTCCACAGCC
T
AAGCCAGCTGACAAAATGTCAAAGAATAAGAAGAAGAAATTGAAGAAGAAGCAGAAGCGCCAGGCAGAA
TTA
CTAGAGAAGCGAATGCAGGAAATTGAGGAAATGGAGAAAGAGTCGGGCCCTGGGCAAAAAAGACCTA
AC
AAGCAAGAAGAATCAGAGAGTCCTGTTGACAGACCCCTGACAGAGAACCCACCTAATAAAATGACCCA
A
GAGAAACTTGAAGAGTCAAATTCCATTGGCCAGGACCAGACACTCACGGAGCGTGGTGGAGAGGGTGGT
GCG
CCAGAGATTAATTGCAATGGAGTGATTGGAGTCGTTAATTACCCTGAGAACAGTAATAATGAGACAC
TG
AGGCATAAAGAGGATCTGCATAATGCTAATGACTGTGATGTCCACACTTTGAAGCAGGAACCTAGTTT
C
CTAAACTCTTCAAATGGAGACAGCAGTCCATCTCAAGACACAGACTCTTGCACACCCACGGCCTCTGAG
ACC
ATGGTGTGCCAATCCTCTGCAGAGCAGTCACTCACCCGACAGGACATCACCCAGCTGGAGGAGAGCA
TT
CGGGCAGATACACCTTCTGGGGATGAGCAGGAGCCCAATGGAGCCCTGGACAGCAAAGGAAAATTCTC
T
GCTGGAAATTTTCTTATTAATCCCCTTGAGCCAAAAAATGCAGAGAAGCTCCAAGTGAAGATCGCAGAC
CTC
GGGAACGCCTGCTGGGTGCACAAGCATTTCACTGAAGATATCCAGACACGGCAGTATCGGTCTTTGG
AA
GTCCTGATAGGATCTGGCTACAACACCCCTGCTGACATCTGGAGCACAGCATGCATGGCCTTTGAACT
A
GCCACAGGGGACTATTTGTTTGAGCCTCATTCAGGGGAGGATTACACACGAGATGAAGACCACATCGCC
CTG
ATCATAGAACTTCTGGGGAAGGTGCCTCGCAAGCTCATTGTGGCAGGAAAATACTCCAAGGAATTTT
TC
ACCAAAAAAGGTGACCTGAAGCACATCACCAAGTTGAAGCCTTGGGGTCTTCTGGAGGTTCTGGTGGA
G
AAATATGAGTGGCCTCAGGAGGAGGCTGCCGGCTTCACAGATTTCCTGCTGCCCATGTTGGAGCTTATG
CCT
GAGAAGAGAGCCACTGCTGCTGAGTGTCTCCGGCATCCTTGGCTAAACTCCTAA


Translation (648 aa):
MERKVLALQARKKRTKAKKDKAQRKPETQHRGSAPHSESDIPEQEEEILGSDDDEQEDPNDYCKGGYHLV
K
IGDLFNGRYHVIRKLGWGHFSTVWLSWDI
QGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPN
G
EMVVQLLDDFKISGVNGT
HICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRII
H
TDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSA
VSTAPQPKPADKMSKNKKKKLKKKQKRQAE
L
LEKRMQEIEEMEKESGPGQKRPNKQEESESPVDRPLTENPPNKMTQEKL
EESNSIGQDQTLTERGGEGG
A
PEINCNGVIGVVNYPENSNNETLRHKEDLHNANDCDVHTLKQEPSFLNSSNGDSSPSQDTDSCTPTASE
T
MVCQSSAEQSLTRQDITQLEESIRADTPSGDEQEPNGALDSK
GKFSAGNFLINPLEPKNAEKLQVKIAD
L
GNACWV
HKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEDYTRDEDHIA
L
IIELLGKVPRKLIVAGKYSKEFFTKK
GDLKHITKLKPWGLLEVLVEKYEWPQEEAAGFTDFLLPMLELM
P
EKRATAAECLRHPWLNS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser