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Report for CCDS8828.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8828.1 Public Homo sapiens 12 KRT6B 24 110 108 CCDS HistoryNCBI Gene:3854Re-query CCDS DB by CCDS ID:8828.1Re-query CCDS DB by GeneID:3854See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8828.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252252.4 ENSP00000252252.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252252.4Link to Ensembl Protein Viewer:ENSP00000252252.3Re-query CCDS DB by Nucleotide ID:ENST00000252252Re-query CCDS DB by Protein ID:ENSP00000252252
Original member Current member NCBI NM_005555.4 NP_005546.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005555.4Link to Protein Sequence:NP_005546.2Re-query CCDS DB by Nucleotide ID:NM_005555Re-query CCDS DB by Protein ID:NP_005546Link to BLAST:NP_005546.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005546.2 564 P04259 564 100% 0 0

Chromosomal Locations for CCDS 8828.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 52447190 52447425 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52447539 52447573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52447778 52447998 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52448842 52448967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52449469 52449633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52449758 52449853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52450012 52450072 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52450406 52450620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 52451539 52452078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGGCCAGCACATCCACCACCATCAGGAGCCACAGCAGCAGCCGCCGGGGTTTCAGTGCCAACTCAGCCA
GG
CTCCCTGGGGTCAGCCGCTCTGGCTTCAGCAGCATCTCCGTGTCCCGCTCCAGGGGCAGTGGTGGCCT
G
GGTGGCGCATGTGGAGGAGCTGGCTTTGGCAGCCGCAGTCTGTATGGCCTGGGGGGCTCCAAGAGGATC
TCC
ATTGGAGGGGGCAGCTGTGCCATCAGTGGCGGCTATGGCAGCAGAGCCGGAGGCAGCTATGGCTTTG
GT
GGCGCCGGGAGTGGATTTGGTTTCGGTGGTGGAGCCGGCATTGGCTTTGGTCTGGGTGGTGGAGCCGG
C
CTTGCTGGTGGCTTTGGGGGCCCTGGCTTCCCTGTGTGCCCCCCTGGAGGCATCCAAGAGGTCACTGTC
AAC
CAGAGTCTCCTGACTCCCCTCAACCTGCAAATTGACCCCGCCATCCAGCGGGTGCGGGCCGAGGAGC
GT
GAGCAGATCAAGACCCTCAACAACAAGTTTGCCTCCTTCATCGACAAGGTGCGGTTCCTAGAGCAGCA
G
AACAAGGTTCTGGACACCAAGTGGACCCTGCTGCAGGAGCAGGGCACCAAGACTGTGAGGCAGAACCTG
GAG
CCGTTGTTCGAGCAGTACATCAACAACCTCAGGAGGCAGCTGGACAACATCGTGGGGGAACGGGGTC
GT
CTGGACTCGGAGCTGAGAAACATGCAGGACCTGGTGGAGGACCTCAAGAACAAATATGAGGATGAAAT
C
AACAAGCGCACAGCAGCAGAGAATGAATTTGTGACTCTGAAGAAGGATGTGGATGCTGCCTACATGAAC
AAG
GTTGAACTGCAAGCCAAGGCAGACACTCTTACAGATGAGATCAACTTCCTGAGAGCCTTGTATGATG
CA
GAGCTGTCCCAGATGCAGACCCACATCTCAGACACATCCGTGGTGCTATCCATGGACAACAACCGCAA
C
CTGGACCTGGACAGCATCATCGCTGAGGTCAAGGCCCAATATGAGGAGATTGCTCAGAGGAGCAGGGCT
GAG
GCTGAGTCCTGGTACCAGACAAAGTACGAGGAGCTGCAGATCACAGCAGGCAGACATGGGGACGACC
TG
CGCAACACCAAGCAGGAGATTGCTGAGATCAACCGCATGATCCAGAGGCTGAGATCTGAGATCGACCA
C
GTCAAGAAGCAGTGTGCCAACCTACAGGCCGCCATTGCTGATGCTGAGCAGCGTGGGGAGATGGCCCTC
AAG
GATGCTAAGAACAAGCTGGAAGGGCTGGAGGATGCCCTGCAGAAGGCCAAGCAGGACCTGGCCCGGC
TG
CTGAAGGAGTACCAGGAGCTGATGAACGTCAAGCTGGCCCTGGATGTGGAGATCGCCACCTACCGCAA
G
CTGCTGGAGGGCGAGGAGTGCAGGCTGAATGGCGAAGGCGTTGGACAAGTCAACATCTCTGTAGTGCAG
TCC
ACCGTCTCCAGTGGCTATGGCGGTGCCAGCGGTGTCGGCAGTGGCTTAGGCCTGGGTGGAGGAAGCA
GC
TACTCCTATGGCAGTGGTCTTGGCGTTGGAGGCGGCTTTAGTTCCAGCAGCGGCAGAGCCACTGGGGG
T
GGCCTCAGCTCTGTTGGAGGCGGCAGTTCCACCATCAAGTACACCACCACCTCCTCCTCCAGCAGGAAG
AGC
TACAAGCACTGA


Translation (564 aa):
MASTSTTIRSHSSSRRGFSANSARLPGVSRSGFSSISVSRSRGSGGLGGACGGAGFGSRSLYGLGGSKRI
S
IGGGSCAISGGYGSRAGGSYGFGGAGSGFGFGGGAGIGFGLGGGAGLAGGFGGPGFPVCPPGGIQEVTV
N
QSLLTPLNLQIDPAIQRVRAEEREQIKTLNNKFASFIDK
VRFLEQQNKVLDTKWTLLQEQGTKTVRQNL
E
PLFEQYINNLRRQLDNIVGERGRLDSELRNMQDLVEDLKN
KYEDEINKRTAAENEFVTLKKDVDAAYMN
K
VELQAKADTLTDEINFLRALYDA
ELSQMQTHISDTSVVLSMDNNRNLDLDSIIAEVKAQYEEIAQRSRA
E
AESWYQTK
YEELQITAGRHGDDLRNTKQEIAEINRMIQRLRSEIDHVKKQCANLQAAIADAEQRGEMAL
K
DAKNKLEGLEDALQKAKQDLARLLKEYQELMNVKLALDVEIATYRKLLEGEEC
RLNGEGVGQVNISVVQ
S
TVSSGYGGASGVGSGLGLGGGSSYSYGSGLGVGGGFSSSSGRATGGGLSSVGGGSSTIKYTTTSSSSRK
S
YKH




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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