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Report for CCDS50544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50544.1 Public Mus musculus 2 Slc2a6 23 108 98 CCDS HistoryNCBI Gene:227659Re-query CCDS DB by CCDS ID:50544.1Re-query CCDS DB by GeneID:227659See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102890.10 ENSMUSP00000099954.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102890.10Link to Ensembl Protein Viewer:ENSMUSP00000099954.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102890Re-query CCDS DB by Protein ID:ENSMUSP00000099954
Original member Current member NCBI NM_001177627.1 NP_001171098.1 Accepted alive Link to Nucleotide Sequence:NM_001177627.1Link to Protein Sequence:NP_001171098.1Re-query CCDS DB by Nucleotide ID:NM_001177627Re-query CCDS DB by Protein ID:NP_001171098Link to BLAST:NP_001171098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171098.1 443 Q3UDF0-2 443 100% 0 0

Chromosomal Locations for CCDS 50544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27021914 27022069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27022719 27022864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27023535 27023643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27024183 27024335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27024585 27024793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27025223 27025322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27025901 27026107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27027141 27027303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27027817 27027905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCAGGAACCCCTGCTAAGAACCGAGGGACTCGACTATGATACCTTCCCCGAGGTGCCCGCGACTCCTG
GA
GAGAGAGAACGAGCCGGGGCCTTGAAAAACAGAAGGGTGTTCCTGGCTACCTTCGCCGCTGTGCTGGG
C
AATTTCAGCTTTGGGTATGCCTTGGTCTACACATCTCCAGTCATCCCTGAACTGAAGCTCTCTTCTGAC
CCA
GCACTACACCTGGACAAAATCCAGGCATCCTGGTTTGGGTCCGTGTTCACCTTGGGTGCCGCAGCAG
GG
GGCCTCAGTGCTATGTTACTCAATGACCTCCTGGGCCGGAAGCTCAGCATCATGTTCTCAGCTGTCCC
C
TCAGCCATTGGCTATGCAATCATGGCCGGTGCCCGTGGCCTCTGGATGCTTCTGTTGGGGAGGATGCTG
ACG
GGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCGGTGTACGTGTCTGAGATTGCACCCCCTGATG
TT
CGTGGGGCCCTGGGGGCCACACCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTACGCCCTTGG
T
CTGCTGCTACCTTGGCGATGGCTTGCTGTGGCTGGAGAGGGGCCGGTTCTCATCATGATCCTGCTGCTC
AGC
TTCATGCCCAACTCTCCTCGCTTCTTGCTCTCAAAGAGCCGGGATGAGGAGGCACTGCAGGCGCTGA
CC
TGGCTGCGAGCTGACTCCGAGGTCCATTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAGAG
T
AGCCGAGTGTCGTGGGCGGAAGCCCGGGAACCCCGTGTGTACCGGCCTGTTCTCATTGCAGTACTGATG
CGC
TTTCTGCAGCAGCTGACAGGCATCACACCCATCCTGGTGTACCTACAGACCATCTTCGACAACACAT
CC
GTGGTGCTGCCCTCCCAGCAGGATGCAGCGATAGTTGGTGCTGTGAGGCTCCTATCTGTGCTGATTGC
T
GCTGTCACCATGGACCTGGCGGGCCGAAAAGTTCTGCTCTATGTGTCAGGCTATGCCATGGGCTGGGGT
CCC
ATCACCTGGCTCCTCATGTCTGAGGTTCTGCCCTTGCGTGCCCGTGGTGTGGCCTCAGGGCTCTGCG
TG
CTGGTCAGCTGGCTCACAGCCTTCGTCCTCACTAACTACTTCCTGCTGGCAGTGAATGCCTTCGGCCT
C
CAGGTGCCTTTCTTCTTCTTCTCGGCCATCTGCCTGCTCAGCTTGCTCTTCACAGGCTGCTGTGTGCCT
GAG
ACCAGGGGCCGCTCGCTGGAGCAGATCGAGGCCTTCTTCCACACTCGCAGGATGTCCTTCAGGCCCT
AG


Translation (443 aa):
MQEPLLRTEGLDYDTFPEVPATPGERERAGALKNRRVFLATFAAVLGNFSFGYALVYTSPVIPELKLSSD
P
ALHLDKIQASWFG
SVFTLGAAAGGLSAMLLNDLLGRKLSIMFSAVPSAIGYAIMAGARGLWMLLLGRML
T
GFAGGLTAACIP
VYVSEIAPPDVRGALGATPQLMAVFGSLSLYALGLLLPWRWLAVAGEGPVLIMILLL
S
FMPNSPRFLLSKSRDEEALQALTWLRADSEVHWEFEQIQDNVRRQ
SSRVSWAEAREPRVYRPVLIAVLM
R
FLQQLTGITPILVYLQTIFDNTSVVL
PSQQDAAIVGAVRLLSVLIAAVTMDLAGRKVLLYVSGYAMGWG
P
ITWLLMSEVLPLRARGVASGLCVLVSWLTAFVLTNYFLLAV
NAFGLQVPFFFFSAICLLSLLFTGCCVP
E
TRGRSLEQIEAFFHTRRMSFRP




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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