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Report for CCDS84786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84786.1 Public Mus musculus 4 Lrrc41 23 108 98 CCDS HistoryNCBI Gene:230654Re-query CCDS DB by CCDS ID:84786.1Re-query CCDS DB by GeneID:230654See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030471.8 ENSMUSP00000030471.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030471.8Link to Ensembl Protein Viewer:ENSMUSP00000030471.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030471Re-query CCDS DB by Protein ID:ENSMUSP00000030471
Original member Current member NCBI NM_153521.2 NP_705741.3 Accepted alive Link to Nucleotide Sequence:NM_153521.2Link to Protein Sequence:NP_705741.3Re-query CCDS DB by Nucleotide ID:NM_153521Re-query CCDS DB by Protein ID:NP_705741Link to BLAST:NP_705741.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705741.3 807 Q8K1C9 807 100% 0 0

Chromosomal Locations for CCDS 84786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116075409 116075607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116079389 116079475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116080549 116080619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116088447 116089569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116092872 116093132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116094877 116095041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116095133 116095231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116095792 116095914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116096143 116096218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116096323 116096542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGGCGGCGCCCGAGGCCTGGCGCGCCCGGAGTTGCTGGTTCTGTGAGGTAGCGGCAGCAACGACCATGG
AG
GCCACGTCCCGGGAGGCGGCGCCAGCGAAGAGCTCGGCCTCGGGCCCCAGCGCTCCCCCCGCCCTGTT
C
GAGCTGTGCGGGCGGGCAGTGAGCGCCCATATGGGGGTTCTGGAGAGCGGGGTGTGGGCCCTCCCAGGC
CCA
ATACTTCAAAGCATCTTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCTCTCA
AA
AAAGGTCTCTCTACTCAAGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAG
T
TTGGAGAGTGTGACTTGCTGGCGAGCCAAGTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGAACC
ATT
GATGTGTCTTCTGATAAACGTCTTTGTGATCAGCGCTTCTCACCTCTCCTGCACAGCTCCCGTCATG
TC
CGACAGCTAACCATCTGCAACATGCTGCAGGGAGCAACTGAGCTAGTGGCAGAGCCCAACCGTAGGGT
T
CTAGAGACCCTGGCCAGTTCTCTGCATACCCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCT
CAG
CAGTCACTTCGACAGCTGCTGCATCAGCTCATCCACCATGGGGCTGTTAGCCAAGTGTCGCTGTACT
CC
TGGCCTGTGCCCGAGTCAGCCCTTTTCATCCTTATTCTTACCATGAGTGCTGGCTTTTGGCAACCAGG
C
CCAGGTAGCTTGCCTTGCCGCCTCTGTGGTGAAGCCTCCCGAGGCCGGGCCCCATCTAGAGATGAAGGG
TCC
TTATTGCTAGGCTCTCGCAGGCCTCGGCGTGATGCAGCAGAGCGATGTGCTGCTGCACTAATGGCCA
CC
CGGCGGAAGAGTGAAGTCAAGCAGATGCCCAGGGCTGTACCTCCCACTCGTGTAACACGCCGCAGCAC
A
CAAGAGAGCCTGGCAATAGGTGGAACAGACTCTAAGTTGTACCTCCCAGCCACCTCTTATGAGGCTTCT
GGC
ACAAAACAGCCATCTGCTCCAGCTGCAGCCTCTGCCTCCTCTTCCACATCATCCAAACGGGCTCCAG
CT
AGCTCAGCCTCACAGCCTAAGCCCTTAAAGCGTTTCAAACGAGCTGCAGGGAAGAAAGGGCCCCGCAC
C
CGTCAGGGGTCTGGTGCAGAGTCTGAAGACCTGTATGACTTTGTTTTTATTGTGGCTGGTGAGAAGGAG
GAT
GGTGAAGAGATGGAGATTGGGGAAGTAGCTTGTGGAGCTCTGGATGGGTCAGATCCCAGCTGTTTGG
GG
CTCCCAGCACTAGAGGCATCCCAGCGATTCCGCAGCATTTCCACCTTGGAGCTATTCACAGTTCCTCT
C
TCCACGGAGGCAGCTCTGACACTGTGCCATCTTCTGAGTTCCTGGGTATCACTGGAGAGCCTTACACTT
TCC
TACAATGGTCTGGGCTCTAATATCTTCCGCCTCCTGGACAGCCTACGGGCCCTGTCAGGCCAGGCTG
GA
TGTCGCCTCCGTGCCCTGCATCTCAGTGACCTTTTCTCACCACTGCCCATCCTGGAATTGACCCGTGC
C
ATTGTGCGAGCCTTGCCCCTGTTGCGGGTCCTGTCTATTCGTGTTGACCACCCAAGCCAGAGGGACAAC
CCT
GCTGTACCAGAGAATGCTGGGCCCCCTGGACACATAGTTGGGGATGAAGAAATACCAGAAAACTGCC
TC
GAGCAGTTGGAAATGGGATTTCCACGAGGAGCCCAGCCAGCCCCACTGCTCTGCTCTGTCCTCAAGGC
C
TCAGGTTCTCTACAGCAGCTGTCACTGGACAGTGCCACCTTTGCCTCGCCTCAAGATTTTGGGCTTGTG
TTG
CAAACACTCAAAGAACACAACCTATCCCTGAAGAGGCTGAGCTTCCATGATATGAATCTTGCAGACT
GT
CAGAGTGAAGTGCTTTTTTTGCTAAAGAATCTGACCCTTCAAGAGATTACCTTCTCCTTCTGCCGTCT
G
TTTGAGAAGCGCCCAGTCCAATTTCTTCCTGAGATGGTTGCTGCTATGAAGGGCAACTCTACACTGAAG
GGC
CTTCGACTACCAGGGAACCGCCTGGGGAACGCTGGCCTATTAGCCCTAGCAGATGTTTTCTCAGAGG
AT
TCTTCCTCTTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTTTGGAGTT
T
GCCAAACGACTGGAGCGCTGGGGCCGAGGAGCCTTTGGTCACCTACGCCTCTTCCAGAACTGGCTGGAC
CAG
GATGCAGTCACAGCAAGAGAAGCAATCCGGCGACTCCGGGCTACCTGCCACGTGGTTAGCGACTCAT
GG
GACTCAACCCAGGCCTTTGCAGATTATGTCAGCACCATGTGA


Translation (807 aa):
MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPSAPPALFELCGRAVSAHMGVLESGVWALPG
P
ILQSILPLLNIYYLERIEETALKK
GLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEAFFSHVLRGT
I
DVSSDKRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAA
Q
QSLRQLLHQLIHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGSLPCRLCGEASRGRAPSRDEG
S
LLLGSRRPRRDAAERCAAALMATRRKSEVKQMPRAVPPTRVTRRSTQESLAIGGTDSKLYLPATSYEAS
G
TKQPSAPAAASASSSTSSKRAPASSASQPKPLKRFKRAAGKKGPRTRQGSGAESEDLYDFVFIVAGEKE
D
GEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLESLTL
S
YN
GLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDN
P
AVPENAGPPGHIVGDEEIP
ENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLV
L
QTLK
EHNLSLKRLSFHDMNLADCQSEVLFLLKNLTLQEITFSFCRLFEKRPVQFLPEMVAAMKGNSTLK
G
LRLPGNRL
GNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLD
Q
DAVTAREAIRRLRATCHVVSDSWDSTQAFADYVSTM




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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