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Report for CCDS36068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36068.1 Public Mus musculus 10 Nup107 23 108 98 CCDS HistoryNCBI Gene:103468Re-query CCDS DB by CCDS ID:36068.1Re-query CCDS DB by GeneID:103468See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064848.6 ENSMUSP00000063590.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064848.6Link to Ensembl Protein Viewer:ENSMUSP00000063590.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064848Re-query CCDS DB by Protein ID:ENSMUSP00000063590
Original member NCBI NM_134010.2 NP_598771.1 Updated not alive Link to Nucleotide Sequence:NM_134010.2Link to Protein Sequence:NP_598771.1Re-query CCDS DB by Nucleotide ID:NM_134010Re-query CCDS DB by Protein ID:NP_598771
Current member NCBI NM_134010.3 NP_598771.1 Accepted alive Link to Nucleotide Sequence:NM_134010.3Link to Protein Sequence:NP_598771.1Re-query CCDS DB by Nucleotide ID:NM_134010Re-query CCDS DB by Protein ID:NP_598771Link to BLAST:NP_598771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598771.1 926 Q8BH74 926 100% 0 0

Chromosomal Locations for CCDS 36068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117750860 117750967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117751320 117751487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117757267 117757380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117757896 117758021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117759172 117759332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117761245 117761347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117762023 117762135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117763731 117763881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117764317 117764355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117765911 117766029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117766334 117766403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117770188 117770236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117770376 117770521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117771334 117771393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117773055 117773131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117773276 117773366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117774456 117774569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117776211 117776289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117777129 117777217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117777593 117777664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117780678 117780726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117781321 117781448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117781957 117782060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117784995 117785139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117787793 117787911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117789974 117790060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117790467 117790558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117792604 117792611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGACAGGAGTGGCTTCGGGGGGATGTCATCCCCTGTGATCCGGGATGCGGAGGTGACGAGGACTGCCC
GG
AAGCACAGTGCTCACAAAAGAGTTCTAATTCAGGCCAACCAAGAGGACAATTTTGGTACTGCTACACC
A
AGAAGCCAGATCATTCCTCGAACGCCAAGCTCCTTTCGACAGCCTTTTGTTACTCCATCGAGCCGAAGC
CTA
CTGAGACACCCGGATATTTCCTACATTCTTGGAACGGAAGGGAGGTCTCCCCGGCACACACAGTCTT
CT
GGGTACTTGGGAAATCTTTCTATGGTGACTAATCTTGATGACAGCAACTGGGCAGCTGCATTCTCATC
C
CAGCGTTTAGGGCTCTACACAAACACAGAGCATCATAGTATGACCGAGGATGTGAACCTAAGTACTGTC
ATG
CTACGGGAAGACGACCCTGGAGAGGCTGCATCCATGAGCATGTTCTCTGATTTCCTGCACTCTTTCT
TG
AAGCACTCTTCAACCACAGTCTTTGATCTCGTAGAAGAATATGAAAATATTTGTGGTAGTCAGGTGAA
T
ATCCTCAGTAAAATAGTGAGCCGCGCAACGCCTGGACTGCAGAAGTTTTCCAAGACGGCCAGTATGCTC
TGG
CTTCTCCAACAGGAGATGGTCACATGGAGGCTGCTCGCCTCTTTGTACAGAGACAGAATACAGTCTT
CA
TTAGAAGAGGAAAATATGTTTGCAATTGCTGGTATTAATGCCAGCGAGAAGATGGTTGTGGAAACGCT
G
TTTCAGAGGGACTCACTGGTCCGGCAGAGCCAGTTGGTGGTAGATTGGCTAGAGAGTATTGCCAAAGAT
GAA
ATCGGAGAATTCTCGGACAATATTGAGTTTTATGCAAAATCAGTGTATTGGGAAAATACCCTCCACT
CC
TTAAAGCAGCGGCAGCTACTGTCTCACATGGGAAGTACCCGGCCTCTGGTCACCGAACTGGACCCAGA
C
GCTCCCATTAGACAGAAGTTGCCACTCGACGATCTGGACAGAGAGGACGAGGTCAGACTGCTGAAGTAC
CTC
TTCACGCTCATCCGTGCTGGCATGACAGAGGAGGCACAACGGCTCTGTAAACGGTGTGGGCAAGCAT
GG
CGAGCTGCAACCCTGGAAGGCTGGAAACTGTACCATGACCCTAATGTTAATGGAGGGACAGAGCTAGA
A
CCTGTTGAAGGGAATCCATATAGACGCATCTGGAAGATTAGTTGCTGGAGAATGGCTGAAGATGAACTT
TTT
AATAAATATGAAAGAGCGATTTACGCGGCACTGAGTGGGAACCTTAAGCAGCTCCTTCCAGTCTGTG
AC
ACGTGGGAAGACACGGTGTGGGCCTACTTCCGGGTGATGGTGGATAGCCTGGTGGAGCAGGAGATTCG
G
ACATCAGTAATGACGCAGGATGACAGTGAGGAGCTCCCTCGAGAGTACATGGAAGCCAATTGGACCTTA
GAA
AAAGTTTTTGAAGAACTTCAAGCCACTGATAAAAAGAGAGTTCTGGAGGAGAATCAAGAGCATTACC
AT
ATAGTTCAGAAATTCCTTATCCTGGGAGACGTTGATGGTTTGATGGATGAATTTAGCAAATGGCTGTC
C
AAGAGCGGAAGCAGTCTGCCCGGACACCTGCTCCGCTTCATGACACACCTCATTCTGTTTCTCCGCACC
CTA
GGCCTCCAGACCAAGGAAGAAGTTTCCATTGAAGTTCTAAAAACATATATACAGCTGTTAATAAGCG
AG
AAGCACACAAGCCTCATAGCGTTCTATACCTGTCATCTGCCTCAAGACCTCGCCGTGGCCCAGTATGC
C
TTATTTTTGGAAGGTGTTACGGAATTTGAGCAGCGGCACCAGTGCCTAGAGCTGGCTAAGGAAGCAGAC
TTG
GATGTTGCGACGATAACGAAAACTGTAGTTGAGAATATTTGCAAGAAAGATAATGGTGAATTTAGTC
AC
CATGACCTGGCTCCATCCCTAGACACTGGCACTACTGAGGAGGACCGCCTGAAGATTGATGTGATCGA
C
TGGCTCGTGTTTGACCCGGCACAGAGAGCGGAAGCCCTGAGGCAAGGCAACGCCATCATGAGGAAGTTC
TTA
GCATTAAAGAAACATGAAGCTGCAAAAGAAGTGTTTGTGAAAATTCCTCAGGATTCCATCGCAGAGA
TC
TATAATCAGTGGGAGGAGCAAGGCATGGAGAGCCCTCTTCCTGCCGAGGATGATAACGCCATCCGAGA
G
CATTTGTGTATCAGAGCCTATCTGGAAGCCCATGAAACCTTCAACGAATGGTTTAAACATATGAATTCG
GCT
CCACAGAAACCTACATTACTATCTCAAGCAACTTTTACAGAGAAAGTGGCTTATGAACACAGAGAAA
AG
AAATACGAGATGGATCATAATATTTGGAAAGGACATTTGGATGCCCTAACTGCTGATGTGAAGGAGAA
A
ATGTACAACGTCTTGTTGTTTGTTGATGGAGGATGGATGGTGGATGTCAGAGAGGACGCCGAGGACGAC
CCT
GAGCGGACGCATCAGATGGTTTTACTGAGGAAGCTCTGTCTCCCCATGCTGTGCTTCCTGCTTCACA
CC
ATACTGCACAGCACCGGACAGTACCAGGAGTGCCTGCAGCTGGCCGACATGGTGTCCTCTGAGCGCCA
C
AAGCTCTATCTGGTGTTTTCTAAGGAAGAACTAAGGAAACTGCTGCAGAAGTTAAGGGAGTCCTCTCTA
ATG
CTCCTAGACCAGGGGCTCGACCCGCTTGGCTATGAAATTCAGTCATAA


Translation (926 aa):
MDRSGFGGMSSPVIRDAEVTRTARKHSAHKRVLIQANQEDNFGTATPRSQIIPRTPSSFRQPFVTPSSRS
L
LRHPDISYILGTEGRSPRHTQSSGYLGNLSM
VTNLDDSNWAAAFSSQRLGLYTNTEHHSMTEDVNLSTV
M
LREDDPGEA
ASMSMFSDFLHSFLKHSSTTVFDLVEEYENICGSQVNILSKIVSRATPGLQKFSKTASML
W
LLQQEMVTWRLLASLY
RDRIQSSLEEENMFAIAGINASEKMVVETLFQRDSLVRQSQLVVDWLESIAKD
E
IGEFSDNIEFYAKSVY
WENTLHSLKQRQLLSHMGSTRPLVTELDPDAPIRQKLPLDDLDREDEVRLLKY
L
FTLIRAGMTEE
AQRLCKRCGQAWRAATLEGWKLYHDPNVNGGTELEPVEGNPYRRIWKISCWRMAEDEL
F
NKYERAIYAALSGNLKQ
LLPVCDTWEDTVWAYFRVMVDSLVEQEIRTSVMTQDDSEELPREYMEANWTL
E
KVFEELQATDKK
RVLEENQEHYHIVQKFLILGDVDGLMDEFSKWLSKSGSSLPGHLLRFMTHLILFLRT
L
GLQTK
EEVSIEVLKTYIQLLISEKHTSLIAFYTCHLPQDLAVAQYALFLEGVTEFEQRHQCLELAKEAD
L
DVATITKTVVENICKKDNGEFSHHDLAPSLDTGTTE
EDRLKIDVIDWLVFDPAQRAEALRQGNAIMRKF
L
ALKKHEAAKEVFVKIPQDSIAEIYNQWEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNS
A
PQKPTLLSQATFTEKVAYEHREKKYE
MDHNIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDAEDD
P
ERTHQMVLLRKLCLPMLCFLLHTILHSTGQYQECLQLADMVSSERHKLYL
VFSKEELRKLLQKLRESSL
M
LLDQGLDPLGYEIQS




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser