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Report for CCDS23620.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23620.1 Public Mus musculus 9 Csrnp1 23 108 98 CCDS HistoryNCBI Gene:215418Re-query CCDS DB by CCDS ID:23620.1Re-query CCDS DB by GeneID:215418See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23620.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000035101.8 ENSMUSP00000035101.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000035101.8Link to Ensembl Protein Viewer:ENSMUSP00000035101.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000035101Re-query CCDS DB by Protein ID:ENSMUSP00000035101
Original member Current member EBI ENSMUST00000215916.1 ENSMUSP00000149214.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000215916.1Link to Ensembl Protein Viewer:ENSMUSP00000149214.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000215916Re-query CCDS DB by Protein ID:ENSMUSP00000149214
Original member Current member EBI ENSMUST00000214058.1 ENSMUSP00000150628.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214058.1Link to Ensembl Protein Viewer:ENSMUSP00000150628.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214058Re-query CCDS DB by Protein ID:ENSMUSP00000150628
Original member Current member NCBI NM_001357560.1 NP_001344489.1 Accepted alive Link to Nucleotide Sequence:NM_001357560.1Link to Protein Sequence:NP_001344489.1Re-query CCDS DB by Nucleotide ID:NM_001357560Re-query CCDS DB by Protein ID:NP_001344489Link to BLAST:NP_001344489.1
Original member Current member NCBI NM_001357561.1 NP_001344490.1 Accepted alive Link to Nucleotide Sequence:NM_001357561.1Link to Protein Sequence:NP_001344490.1Re-query CCDS DB by Nucleotide ID:NM_001357561Re-query CCDS DB by Protein ID:NP_001344490Link to BLAST:NP_001344490.1
Original member Current member NCBI NM_001357562.1 NP_001344491.1 Accepted alive Link to Nucleotide Sequence:NM_001357562.1Link to Protein Sequence:NP_001344491.1Re-query CCDS DB by Nucleotide ID:NM_001357562Re-query CCDS DB by Protein ID:NP_001344491Link to BLAST:NP_001344491.1
Original member Current member NCBI NM_153287.4 NP_695019.1 Accepted alive Link to Nucleotide Sequence:NM_153287.4Link to Protein Sequence:NP_695019.1Re-query CCDS DB by Nucleotide ID:NM_153287Re-query CCDS DB by Protein ID:NP_695019Link to BLAST:NP_695019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001344489.1 583 P59054 583 100% 0 0
NP_001344490.1 583 P59054 583 100% 0 0
NP_001344491.1 583 P59054 583 100% 0 0
NP_695019.1 583 P59054 583 100% 0 0

Chromosomal Locations for CCDS 23620.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 119972240 119973211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119973364 119973678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119974154 119974413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 119977002 119977206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGACTGGGCTACTGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTCCAGTTCCTCCTCCTCCTCAT
CG
TTCTCTAGCCGGCTCTCTCTCTCCTCCTTCCCCGCCTCTTCTGCCTCCCCTGCCTGGAACTCTGATGA
G
GAGGGACCAGGTGGTCAGGCACCCCAGTCTGATCAGGACTCCTGTGGCCTCCAGAGTTTCACTCCCCCG
TCC
ATCCTGAAGCGGGCTCCTCGGGAGCGTCCAGGTCACGTGGCCTTTAACGGCATCACCGTCTACTATT
TC
CCACGGTGCCAGGGATTCACCAGTGTGCCCAGCCGTGGTGGCTGTACCCTGGGCATGGCTTCTCGGCA
C
AGCACCTGCCGCCTTTTCTCCTTAGCTGAGTTTACACAGGAGCAGGTCCGGGCTCGGCGTGAGAAGCTC
CGC
CGCCGTTTAAAGGAGGAGAAGCTGGAGATGCTGAGGTGGAAGTTTTCAGTGGCTGGAGTTCCGGAGT
CA
GGGGCAGGCGTGCCTCTCACAGCGGATGCCATCGATGACGCCTCTGTAGAGGAGGACTTGGCAGTGGC
C
GTGGCAAATGGCCGCCTGGAGGAAGCCAATTTCCTCCAGCCCCATCCACCTCGGCAGCGACGGGCTCTC
CTT
CGGGCTTCCGGCGTTCGAAGGATTGACCGAGAGGAGAAGCGGGAGCTGCAGGTGCTGCGCCAGTCCC
GG
GAGGATTGTGGTTGTCACTGTGATGGCGTCTGTGACCCTGAGACCTGCAGTTGCAGCTTGGCCGGCAT
T
AAGTGCCAGATGGATCACACGTCCTTCCCCTGTGGCTGCTGCAGGGAGGGCTGCGAGAACCCCAATGGT
CGA
GTGGAATTCAATCAGACAAGAGTTCAGACGCACTTCATTCACACCCTCACCCGCCTGCAGATGGAGC
AG
GGTGCCGAGAGCTTGGGGGACCTGGAGTCCCCCGTGGAGGACACTCCTGTTGAACAAGCCGCGCTTTC
C
CCCTTTCCGCCTTCCAAGCCCCCTGTGAGCAGTGAACTGGGGGACAGCAGTTGCAGCAGCGATATGACA
GAC
TCTTCCACGACCTTGTCCTCTGGCAGCAGCGAGCCTCCAAACCACCCTGCCCACCCCAGCCTGCCAG
GT
CCCAGCTTCCGGTCTGGCGTAGATGAAGACAGCCTGGAACAGATCCTGAATTTCAGTGACTCTGACCT
C
GGAATTGAGGAGGAGGAGGAGGAGGGAGGGGGTGTGGGCAACTTGGATAACCTCAGCTGCTTCCATCTG
GCT
GACATCTTTGGTACCGGTGACCCCGGCAGCCTGGCCAGCTGGACTCACAGCCAGTCTGGCTCTAGCC
TC
GCATCGGGCATCCTAGATGAGAATGCCAACCTGGACGCCAGTTGCTTCCTGAACAGCGGACTTGGAGG
G
CTGAGAGAAGGTAGCCTCCCTGGCAGTTCTGGGTCCCCTGAGGGGGACGCCGTCCAGAGCAGCTCCTGG
GAC
CTCAGCTTATCCTCCTGTGACTCCTTTGAGCTTCTCCAGGCTCTGCCAGATTATAGTCTGGGACCTC
AC
TATACTTCCCGAAGGGTGTCGGGCAGCCCGGATAGCCTTGAGACCTTCCACCCATTGCCCAGCTTCTC
T
CCACCACGGGATGCGAGCACTTGCTTCCTGGAGTCTCTCGTGGGCCTGTCTGAGCCGGTTACAGAAGTC
CTG
GCACCCCTTCTGGAGAGCCAGTTTGAGGATGCTGCCTTGGCACCTTTGTTGGAGCCTGTGCCAGTGT
AA


Translation (583 aa):
MTGLLKRKFDQLEEDDSSSSSSSSFSSRLSLSSFPASSASPAWNSDEEGPGGQAPQSDQDSCGLQSFTPP
S
ILKRAPRERPGHVAFNGITVYYFPRCQGFTSVPSRGGCTLGMASRHSTCRLFSLAEFTQEQVRARREKL
R
RRLKEEKLEMLRWK
FSVAGVPESGAGVPLTADAIDDASVEEDLAVAVANGRLEEANFLQPHPPRQRRAL
L
RASGVRRIDREEKRELQVLRQSREDCGCHCDGVCDPETCSCSLAGIKCQ
MDHTSFPCGCCREGCENPNG
R
VEFNQTRVQTHFIHTLTRLQMEQGAESLGDLESPVEDTPVEQAALSPFPPSKPPVSSELGDSSCSSDMT
D
SSTTLSSGSSEPPNHPAHPSLPGPSFRSGVDEDSLEQILNFSDSDLGIEEEEEEGGGVGNLDNLSCFHL
A
DIFGTGDPGSLASWTHSQSGSSLASGILDENANLDASCFLNSGLGGLREGSLPGSSGSPEGDAVQSSSW
D
LSLSSCDSFELLQALPDYSLGPHYTSRRVSGSPDSLETFHPLPSFSPPRDASTCFLESLVGLSEPVTEV
L
APLLESQFEDAALAPLLEPVPV




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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