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Report for CCDS39855.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
39855.1 |
Public |
Mus musculus |
7 |
Selenov |
23 |
108 |
98 |
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Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47
Review status: Reviewed (by RefSeq and Havana)
Attributes |
Contains selenocysteine |
Nonsense-mediated decay (NMD) candidate |
Sequence IDs included in CCDS 39855.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
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EBI |
ENSMUST00000056589.13 |
ENSMUSP00000050372.7 |
Accepted |
alive |
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NCBI |
NM_175033.4 |
NP_778198.2 |
Accepted |
alive |
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Chromosomal Locations for CCDS 39855.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also. |
Translation Exceptions: replace the symbol * (codon TGA) with U at amino acid position 255
Nucleotide Sequence (987 nt): ATGAATAACAAGGCGCGGGTCCCCGCTCCCTCCTCAGTCCGGGCAAACACCCCGGCCCGGACACCCGCTC CCATCCGAACCGCGACCCCAGTCAGGGCCCCGAACCCAGCGCACAACTCGACTCCAGTCCGAACTTCCAT CCGGGTCCGGGCTCCTGCCCAAGTCCCTAACCCTGTTCCAATCCGGTTCCCAACTCCAGCCCCAGTCCCT GCCCCAACCCTAACCCCAGCCCCAACTCCAGCTCCAGTCCGGCATGCAGCACCGGTGCGGACTCCAGCAC CAGTCCGGGCCCCGAATCTAGGTCGGGTCTTTCCTAAGATCTCTCCAGGCAGGTTCTTCCCGAGCTTGGC CTCGCCCACGGCACAGCCCCTTTCTTCCAGGGCTGCTAGCGCTCTCTTGAAGGATCCCACACTCGCTCAA AATCAGAAACCCTCGATCCACAGCCTAGCGGAGGCCATCCAGGGGCCCCTTCCAGTGCTCACTCCCTCGT CCTCCAAGACACAAGGCTCCATACCGGACACCGCCTCTCCCATAGACTCCTTGGCTTCTACTGCCATGGC CTCCAGTACATTGGGCCCCATTCCGGGCCCCAACCCTACACTAGAGTTCTTGGCCTCCCCGCTGAAGGAA ACCCCTGGTCTGGGTAAGCTCTCCACGATTTCCCCAGCACCCAGCTTCGGTTCCACTAAGGAGATCCCAT CCACCAGCGAGGACGTCCCAACGCCCAACAGAATCTTGATCCGTGTGATGTACTGTGGCCTCTGAAGCTA TGGCCTTCGGTACATTATACTGAAAAGGACCCTGGAGCATCAATTCCCAAACCTTCTGGAGTTTGAGGAG GAAAGAGCTACCCAGGTTACAGGGGAGTTTGAAGTGTTTGTGGATGGGAAGCTGATCCATTCCAAGAAGA AAGGTGATGGCTTTGTGGATGAGTCCGGTCTGAAGAAACTTGTGGGTGCTATTGACGAAGAGATCAAGAA GAGGTAG
Translation (328 aa): MNNKARVPAPSSVRANTPARTPAPIRTATPVRAPNPAHNSTPVRTSIRVRAPAQVPNPVPIRFPTPAPVP APTLTPAPTPAPVRHAAPVRTPAPVRAPNLGRVFPKISPGRFFPSLASPTAQPLSSRAASALLKDPTLAQ NQKPSIHSLAEAIQGPLPVLTPSSSKTQGSIPDTASPIDSLASTAMASSTLGPIPGPNPTLEFLASPLKE TPGLGKLSTISPAPSFGSTKEIPSTSEDVPTPNRILIRVMYCGLUSYGLRYIILKRTLEHQFPNLLEFEE ERATQVTGEFEVFVDGKLIHSKKKGDGFVDESGLKKLVGAIDEEIKKR
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