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Report for CCDS23878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23878.1 Public Mus musculus 10 Nodal 23 108 98 CCDS HistoryNCBI Gene:18119Re-query CCDS DB by CCDS ID:23878.1Re-query CCDS DB by GeneID:18119See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049339.6 ENSMUSP00000039653.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049339.6Link to Ensembl Protein Viewer:ENSMUSP00000039653.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049339Re-query CCDS DB by Protein ID:ENSMUSP00000039653
Original member Current member NCBI NM_013611.5 NP_038639.2 Accepted alive Link to Nucleotide Sequence:NM_013611.5Link to Protein Sequence:NP_038639.2Re-query CCDS DB by Nucleotide ID:NM_013611Re-query CCDS DB by Protein ID:NP_038639Link to BLAST:NP_038639.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038639.2 354 P43021 354 100% 0 0

Chromosomal Locations for CCDS 23878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61418300 61418495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61422982 61423697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61424484 61424636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGAGTGCCCACAGCCTCCGCATCCTTCTTCTTCAAGCCTGTTGGGCTCTACTCCACCCGCGCGCCCCGA
CC
GCGGCCGCTTTGCCTCTGTGGACACGGGGGCAGCCCTCGTCACCGTCCCCTCTGGCGTACATGTTGAG
C
CTCTACCGAGACCCGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACC
GGA
CAGAACTGGACTTTCACGTTTGACTTCTCTTTTTTGAGCCAAGAAGAGGATCTGGTATGGGCGGAGC
TC
CGGTTGCAGCTGCCGGGCCCCATGGACATACCCACTGAGGGCCCACTCACCATTGACATTTTCCACCA
G
GCCAAGGGGGATCCAGAGCGGGACCCCGCTGACTGCCTGGAGCGCATTTGGATGGAGACGTTCACCGTC
ATT
CCTTCTCAGGTCACGTTTGCCTCAGGCAGCACAGTCCTGGAGGTGACCAAGCCACTCTCCAAGTGGC
TA
AAGGACCCCAGGGCACTGGAAAAGCAGGTGTCCAGTCGAGCAGAAAAGTGTTGGCATCAGCCCTACAC
C
CCACCTGTACCTGTCGCCAGCACCAATGTGCTCATGCTCTACTCCAACCGGCCTCAGGAGCAGAGGCAG
CTA
GGGGGCGCCACTTTGCTTTGGGAAGCTGAGAGCTCCTGGCGGGCCCAGGAGGGACAGCTGTCTGTAG
AG
AGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGT
C
AAGTTCCAGGTGGACTTCAACCTGATTGGCTGGGGCTCCTGGATCATCTACCCCAAGCAGTACAATGCC
TAT
CGCTGTGAGGGCGAGTGTCCTAACCCTGTGGGGGAGGAGTTTCATCCTACCAACCATGCCTACATCC
AG
AGCCTGCTGAAACGATACCAACCCCACCGGGTTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAGCC
A
CTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGGAACACCACAAGGACATGATTGTGGAGGAG
TGT
GGGTGCCTCTGA


Translation (354 aa):
MSAHSLRILLLQACWALLHPRAPTAAALPLWTRGQPSSPSPLAYMLSLYRDPLPRADIIRSLQAQDVDVT
G
QNWTFTFDFSFLSQEEDLVWAELRLQLPGPMDIPTEGPLTIDIFHQAKGDPERDPADCLERIWMETFTV
I
PSQVTFASGSTVLEVTKPLSKWLKDPRALEKQVSSRAEKCWHQPYTPPVPVASTNVLMLYSNRPQEQRQ
L
GGATLLWEAESSWRAQEGQLSVERGGWGRRQRRHHLPDRSQLCRRVKFQVDFNLIGWGSWIIYPKQYNA
Y
RCEGECPNPVGEEFHPTNHAYIQ
SLLKRYQPHRVPSTCCAPVKTKPLSMLYVDNGRVLLEHHKDMIVEE
C
GCL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser