NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS37061.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37061.1 Public Mus musculus 15 Spag1 23 108 98 CCDS HistoryNCBI Gene:26942Re-query CCDS DB by CCDS ID:37061.1Re-query CCDS DB by GeneID:26942See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37061.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047348.10 ENSMUSP00000047335.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047348.10Link to Ensembl Protein Viewer:ENSMUSP00000047335.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000047348Re-query CCDS DB by Protein ID:ENSMUSP00000047335
Original member Current member EBI ENSMUST00000171205.2 ENSMUSP00000132233.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000171205.2Link to Ensembl Protein Viewer:ENSMUSP00000132233.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000171205Re-query CCDS DB by Protein ID:ENSMUSP00000132233
Original member Current member NCBI NM_001359980.1 NP_001346909.1 Accepted alive Link to Nucleotide Sequence:NM_001359980.1Link to Protein Sequence:NP_001346909.1Re-query CCDS DB by Nucleotide ID:NM_001359980Re-query CCDS DB by Protein ID:NP_001346909Link to BLAST:NP_001346909.1
Original member Current member NCBI NM_012031.4 NP_036161.2 Accepted alive Link to Nucleotide Sequence:NM_012031.4Link to Protein Sequence:NP_036161.2Re-query CCDS DB by Nucleotide ID:NM_012031Re-query CCDS DB by Protein ID:NP_036161Link to BLAST:NP_036161.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346909.1 901 Q80ZX8-1 901 100% 0 0
NP_036161.2 901 Q80ZX8-1 901 100% 0 0

Chromosomal Locations for CCDS 37061.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 36181698 36181843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36183657 36183816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36186607 36186732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36190472 36190536 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36191126 36191235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36192004 36192109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36195376 36195506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36197738 36197844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36200202 36200361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36210543 36210821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36211100 36211199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36216167 36216319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36221406 36221566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36224109 36224241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36227136 36227262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36233203 36233343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36234301 36234669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 36234767 36234898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGACTGCTAAGGCTAAGGACTGTCCATCATTGTGGGGCTTTGGAACAACAAAAACATTTAAAATTCCCA
TC
GAACATTTGGATTTCAAGTATATTGAAAACTGTTCAGATGTGAAACACCTGGAAAAAATTCTTTATGT
G
CTGAGGTCTGGTGAAGAAGGCTACTATCCTGAACTCACGGAATTTTGCGAGAAGTGCCTCACCAACTTG
GCT
CCTAAAAGTCGAGCTCTGAGGAAGGACAAGCCTGCAGAGACAGCATCCAGCTTTTCAGCGGAAGAGT
GG
GAAAAAATCGACAGTGATCTAAAGAGTTGGGTGTCAGAAATCAAAAGAGAGGAAAATACATGTCACTT
C
CATGACCCTGAAAACCATCCCGGAGTGGAAGATCCTCTGCCTCCTGTCCGCGGCTCCACCTGCTGCCCT
CAC
AGTGGCAAGGAAACATATTCTAAAAGTAAGACAGCTAAGAAGAGGATTCCAAGGGATTATGCAGAAT
GG
GATAAATTTGATGTGGAAAAAGAATGTTCAAAGATTGATGAGGATTACAAAGAAAAGACTGTCATAAA
C
AACAAGGCTCATCTGTCTAAAATTGAGACAAAAATAGAAACAGCAGGTCTGACTGAGAAGGAAAAGAGT
TTT
CTTGCCAATCGTGAAAAGGGAAAAGGGAACGAGGCTTTCTACTCTGGGGACTATGAAGAGGCCGTGA
TG
TATTACACCAGGAGCTTATCAGCCCTTCCCACCGCCATTGCCTATAACAATCGAGCTCAGGCCGAAAT
C
AAGTTGCAGAGATGGAGCAGTGCTCTTGAAGACTGTGAGAAGGCCTTGGAGCTAGATCCCGGAAACGTA
AAA
GCTCTCCTGAGACGAGCCACTACATATAAACATCAAAACAAGCTCCAGGAAGCTGTGGACGACCTGA
GA
AAGGTGCTGCAGGTGGAGCCGGACAACGACTTGGCCAAGAAGACCTTATCAGAGGTTGAAAGAGATCT
G
AAGAATTCAGAGCCTGTCTCTGAGCTCCAAACCAAAGGGAAGAGGATGGTTATTGAAGAAGTTGAAAAC
TCG
GGAGATGAAGGTGGAAAGGGAAGCGCAGATGAGCGTGAAGATGGTGGCTCGGATGAGGCGGCCATGG
GC
AACATTCAGAAGAAGCTGATGGTCCGCCGGAGCGAGGGTGGCAGGCGGTCGCGGCGGGGCCGGACACC
G
GGGCCCCGAGCTGAGCAGCAGGGAGGCCTGCGAGAGACAGCGACGGCCAGCACCGGCGACAGTCACTAC
CCG
GAGGAGCCGCGAGCCGCTGACAACCCCAGCGGCCTCAAGAGACGGGGCAACGAGCTGTTCCGCGGCG
GG
CAATTCGCAGAGGCAGCCGCGCAATACTCGGTGGCGATAGCGCAGCTGGAACCCACAGGAAGTGCAAA
T
GCGGATGAGCTAAGCATCTTGTATTCAAATAGAGCGGCATGCTACCTCAAAGAAGGGAACTGCAGGGAC
TGC
ATCCAGGATTGTAACAGGGCTCTGGAACTTCATCCGTTCTCAGTGAAGCCTCTTCTGCGGCGAGCAA
TG
GCCTATGAGACCTTAGAGCAATACAGGAACGCATATGTGGACTATAAAACAGTGCTGCAGATAGATTG
T
GGGATCCAGCTGGCGAGCGACAGTGCTAACAGAATAGCACGAATCTTAACAGAGCTAGATGGATCAAAA
TGG
CGGGAGAGACTGCCACCCATCCCAGCTGTACCCACATCTGAGCCACTGCGAGTTTGGCTCCCTGCTG
CA
GAGACCCCAGACCAAGATCCCTGTCCCAACAACTGCATGCCGAGCATCACAGATGAAAAAATGTTTCA
A
GCCCTCAAGGAAGAAGGAAATCAACTTGTAAAGGACAAAAATTATAAAGATGCCATTAGTAAATACAAT
GAA
TGCTTAAAGATTAACAGCAAGGCATGTGCCATCTATACAAACAGGGCTCTCTGTTACCTGAAGCTGG
GC
CAGTTTGAAGAGGCAAAGCTGGACTGTGAGCAGGCGCTTCAGATAGACGGCGAGAATGTGAAAGCCAG
C
CACAGACTAGCGCTCGCCCAGAAAGGACTCGAGAACTGCCGGGAAAGCGGGGTGGACCCCAGTCAAGTC
CTC
CTAAGCCCAGATTCCAGTGAAGCCGCCCGGCACCTGGACACTAAGAATGACACAGCACCTCCCAGCA
AA
GGAAGGGAGAGGAGGAGAATCCAAGTCCAAGAGGTGGATGGCAGCAGTGATGAGGAGCCTGAGAGACC
T
GCAGAGGCCTCTGCTACCTCCGCACCTGCCAGAGATGGTGTGGAAGATGGAGGGTCTGCAGAACCAGCA
GAA
AAACTCGACGTCTCCAAGCCTACTAATGCCTATGAGTTTGGACAGGTCCTAAGCACTATCAGTGCCA
GG
AAAGATGAAGAGGCCTGTGCACATCTTTTAGCCATCACTGCACCCAAAGACCTGCCACTGTTGCTAAG
T
AACAAACTTGAGGGGGACACGTTCCTCCTCCTCATTCAGTCACTTAAAAGTCACCTTGTGGCTAAAGAC
CCC
TCCCTGGTGTATGAGCATCTCCTGTATCTGAGCAAAGCAGAGAGGTTTAAGACGATGCTGACACTAA
TT
AACAAAGGCCAAAAGGAGCAGATGGCGCAGCTGTTTGATGGTCTGTCAGACACACAGTCCGACGGTTT
G
ACGGCAGAGGATGTACAGGCCCTAAGAAGGCAGTATGAGCTTTAA


Translation (901 aa):
MTAKAKDCPSLWGFGTTKTFKIPIEHLDFKYIENCSDVKHLEKILYVLRSGEEGYYPELTEFCEKCLTNL
A
PKSRALRKDKPAETASSFSAEEWEKIDSDLK
SWVSEIKREENTCHFHDPENHPGVEDPLPPVRGSTCCP
H
SGK
ETYSKSKTAKKRIPRDYAEWDKFDVEKECSKIDEDYKEKTVINNKAHLSKIETKIETAGLTEKEKS
F
LANREKGKGNEAFYSGDYEEAVMYYT
RSLSALPTAIAYNNRAQAEIKLQRWSSALEDCEKALELDPGNV
K
ALLRRATTYKHQNKLQEAVDDLRKVLQVEPDNDLAKKTLSEVERDLKNSEPVSELQTKGKRMVIEEVEN
S
GDEGGKGSADEREDGGSDE
AAMGNIQKKLMVRRSEGGRRSRRGRTPGPRAEQQGGLRETATASTGDSHY
P
EEPRAADNPSGLKRRGNELFRGGQFAEAAAQYSVAIAQLEPT
GSANADELSILYSNRAACYLKEGNCRD
C
IQDCN
RALELHPFSVKPLLRRAMAYETLEQYRNAYVDYKTVLQIDCGIQLASDSANRIARILTELDGSK
W
RERLPPIPAVPTSEPLRVWLPAAETPDQDPCPNNCMPSIT
DEKMFQALKEEGNQLVKDKNYKDAISKYN
E
CLKINSKACAIYTN
RALCYLKLGQFEEAKLDCEQALQIDGENVKASHRLALAQKGLENCRESGVDPSQV
L
LSPDSSEAARHLDTKNDTAPPSKGRERRRIQVQE
VDGSSDEEPERPAEASATSAPARDGVEDGGSAEPA
E
KLDVSKPTNAYEFGQVLSTISARKDEEACAHLLAITAPKDLPLLLSNKLEGDTFLLLIQSLKSHLVAKD
P
SLVYEHLLYLSKAERFK
TMLTLINKGQKEQMAQLFDGLSDTQSDGLTAEDVQALRRQYEL



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser