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Report for CCDS93406.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93406.1 Public Homo sapiens 3 TSC22D2 24 110 108 CCDS HistoryNCBI Gene:9819Re-query CCDS DB by CCDS ID:93406.1Re-query CCDS DB by GeneID:9819See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93406.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000688009.1 ENSP00000510392.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000688009.1Link to Ensembl Protein Viewer:ENSP00000510392.1Re-query CCDS DB by Nucleotide ID:ENST00000688009Re-query CCDS DB by Protein ID:ENSP00000510392
Original member Current member NCBI NM_001303264.2 NP_001290193.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001303264.2Link to Protein Sequence:NP_001290193.1Re-query CCDS DB by Nucleotide ID:NM_001303264Re-query CCDS DB by Protein ID:NP_001290193Link to BLAST:NP_001290193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001290193.1 756 O75157-2 756 100% 0 0

Chromosomal Locations for CCDS 93406.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 150409351 150411308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 150457076 150457127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 150458376 150458636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2271 nt):
ATGTCCAAGATGCCGGCCAAGAAGAAGAGCTGCTTCCAGATCACCAGTGTCACCACGGCCCAGGTGGCCA
CTAGCATCACCGAGGACACCGAGAGCTTGGACGACCCGGACGAGTCACGCACAGAGGACGTCTCCTCCGA
GATTTTCGACGTCTCTCGGGCCACGGATTATGGCCCTGAGGAGGTCTGCGAGCGCAGCTCTTCCGAAGAG
ACGCTTAACAATGTTGGGGATGCGGAGACTCCCGGGACCGTCTCCCCAAACCTCCTCCTAGATGGGCAGC
TGGCAGCGGCGGCTGCTGCTCCCGCCAACGGAGGAGGAGTCGTTTCGGCCCGGAGCGTGTCTGGGGCGCT
CGCCAGTACCCTGGCGGCGGCTGCCACTTCGGCCCCCGCCCCCGGAGCACCCGGCGGCCCCCAGCTCGCG
GGCTCATCCGCCGGGCCAGTGACTGCAGCCCCATCTCAGCCTCCCACCACATGTAGTTCCCGTTTTCGCG
TGATCAAGCTGGACCACGGGAGCGGAGAGCCCTATAGACGCGGCCGATGGACGTGTATGGAATACTATGA
GAGGGATTCAGACAGCAGCGTCCTGACTAGATCCGGGGATTGCATTAGACACAGCAGTACTTTTGACCAG
ACTGCGGAGCGGGACAGCGGCCTGGGCGCCACCGGAGGGTCGGTGGTGGTAGTAGTGGCCTCCATGCAGG
GGGCGCACGGGCCCGAGTCGGGAACTGACAGCTCCTTGACTGCTGTGTCACAGCTACCCCCGTCGGAGAA
AATGAGCCAGCCCACTCCGGCCCAGCCGCAGAGTTTTAGCGTTGGGCAGCCACAGCCGCCGCCGCCACCC
GTAGGTGGGGCTGTGGCTCAAAGCTCGGCTCCGCTGCCGCCGTTCCCGGGAGCCGCGACCGGGCCGCAGC
CAATGATGGCAGCCGCGCAGCCCAGCCAGCCCCAGGGAGCGGGGCCCGGGGGACAGACTCTGCCGCCGAC
GAATGTAACCCTGGCGCAGCCGGCTATGTCCCTGCCTCCGCAGCCGGGCCCTGCAGTGGGCGCCCCCGCG
GCGCAGCAGCCCCAGCAGTTCGCGTATCCTCAGCCTCAGATACCGCCCGGACATTTGCTGCCCGTCCAGC
CCTCCGGCCAGAGTGAGTACCTGCAGCAGCACGTGGCCGGCCTGCAGCCGCCAAGCCCCGCGCAGCCCTC
GTCCACCGGCGCCGCAGCGAGCCCCGCCACGGCGGCCACCCTTCCCGTGGGCACCGGCCAGAATGCTTCC
TCGGTGGGCGCGCAGCTCATGGGCGCGTCTTCCCAGCCCAGCGAAGCCATGGCCCCCCGGACGGGACCAG
CGCAAGGCGGGCAGGTCGCGCCTTGTCAGCCGACTGGAGTGCCCCCGGCTACTGTGGGAGGCGTGGTGCA
GCCGTGCCTCGGTCCTGCCGGGGCTGGGCAGCCCCAGTCCGTGCCTCCGCCGCAGATGGGTGGCAGTGGT
CCGCTGTCAGCCGTACCTGGTGGCCCTCACGCCGTGGTGCCCGGAGTTCCAAACGTGCCTGCAGCCGTGC
CCGCTCCAAGCGTGCCTAGTGTGTCTACCACTTCTGTTACTATGCCAAATGTACCCGCGCCTCTGGCCCA
GTCGCAACAGCTGAGCAGCCATACGCCAGTCAGCAGGAGCAGCAGCATAATCCAGCATGTTGGGCTGCCC
TTAGCGCCAGGCACACACAGCGCACCAACAAGTCTACCACAGTCTGACCTAAGCCAGTTTCAAACTCAGA
CCCAGCCTTTAGTCGGGCAAGTCGACGATACTAGAAGAAAATCAGAACCCCTACCTCAACCACCACTTTC
TCTCATTGCTGAAAATAAGCCTGTTGTGAAGCCGCCTGTTGCAGATTCCCTGGCAAACCCCCTTCAGTTA
ACACCTATGAACAGTCTGGCCACCTCTGTATTCAGCATAGCTATTCCTGTTGATGGTGATGAAGACAGTG
CATCTGGGGGAGGTGTTGTAGCCATTGACAACAAAATAGAACAAGCAATGGATCTGGTGAAAAGCCATTT
GATGTATGCAGTAAGAGAAGAAGTGGAAGTTTTAAAGGAACAAATAAAAGAATTAGTTGAAAGAAACTCT
TTACTTGAACGAGAAAATGCACTGTTAAAATCTCTTTCAAGCAATGATCAATTATCCCAACTCCCAACCC
AACAGGCCAATCCTGGTAGCACTTCTCAACAGCAAGCAGTGATAGCACAGCCTCCGCAGCCAACGCAACC
TCCACAGCAGCCGAATGTCTCCTCAGCATAA

Translation (756 aa):
MSKMPAKKKSCFQITSVTTAQVATSITEDTESLDDPDESRTEDVSSEIFDVSRATDYGPEEVCERSSSEE
TLNNVGDAETPGTVSPNLLLDGQLAAAAAAPANGGGVVSARSVSGALASTLAAAATSAPAPGAPGGPQLA
GSSAGPVTAAPSQPPTTCSSRFRVIKLDHGSGEPYRRGRWTCMEYYERDSDSSVLTRSGDCIRHSSTFDQ
TAERDSGLGATGGSVVVVVASMQGAHGPESGTDSSLTAVSQLPPSEKMSQPTPAQPQSFSVGQPQPPPPP
VGGAVAQSSAPLPPFPGAATGPQPMMAAAQPSQPQGAGPGGQTLPPTNVTLAQPAMSLPPQPGPAVGAPA
AQQPQQFAYPQPQIPPGHLLPVQPSGQSEYLQQHVAGLQPPSPAQPSSTGAAASPATAATLPVGTGQNAS
SVGAQLMGASSQPSEAMAPRTGPAQGGQVAPCQPTGVPPATVGGVVQPCLGPAGAGQPQSVPPPQMGGSG
PLSAVPGGPHAVVPGVPNVPAAVPAPSVPSVSTTSVTMPNVPAPLAQSQQLSSHTPVSRSSSIIQHVGLP
LAPGTHSAPTSLPQSDLSQFQTQTQPLVGQVDDTRRKSEPLPQPPLSLIAENKPVVKPPVADSLANPLQL
TPMNSLATSVFSIAIPVDGDEDSASGGGVVAIDNKIEQAMDLVKSHLMYAVREEVEVLKEQIKELVERNS
LLERENALLKSLSSNDQLSQLPTQQANPGSTSQQQAVIAQPPQPTQPPQQPNVSSA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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