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Report for CCDS1541.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1541.1 Public Homo sapiens 1 NVL 24 110 108 CCDS HistoryNCBI Gene:4931Re-query CCDS DB by CCDS ID:1541.1Re-query CCDS DB by GeneID:4931See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1541.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281701.11 ENSP00000281701.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281701.11Link to Ensembl Protein Viewer:ENSP00000281701.6Re-query CCDS DB by Nucleotide ID:ENST00000281701Re-query CCDS DB by Protein ID:ENSP00000281701
Original member Current member NCBI NM_002533.4 NP_002524.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002533.4Link to Protein Sequence:NP_002524.2Re-query CCDS DB by Nucleotide ID:NM_002533Re-query CCDS DB by Protein ID:NP_002524Link to BLAST:NP_002524.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002524.2 856 O15381-1 856 100% 0 0

Chromosomal Locations for CCDS 1541.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 224227626 224227670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224231226 224231296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224233201 224233289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224236506 224236582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224250212 224250318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224268034 224268133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224275339 224275458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224281123 224281185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224286026 224286130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224287775 224287993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224289484 224289733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224294267 224294411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224296501 224296618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224300562 224300663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224303723 224303857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224304736 224304812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224305034 224305166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224307991 224308263 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224311800 224311857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224317694 224317793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224317878 224317930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224326391 224326464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 224330071 224330127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2571 nt):
ATGAAGCCCAGACCTGCAGGGTTCGTGGATAATAAACTCAAGCAGCGAGTCATCCAGTACCTTACCAGTA
ACAAATGTGGCAAATATGTGGACATTGGAGTCTTAGCGTCTGATTTACAAAGAGTGTACAGTATAGACTA
TGGTCGAAGAAAAAGAAATGCTTTTAGGATTCAGGTAGAAAAAGTATTTAGCATAATTAGTAGTGAGAAG
GAACTTAAGAATTTAACAGAATTAGAAGATGAACATTTGGCAAAAAGGGCAAGACAAGGTGAAGAGGATA
ATGAGTATACTGAAAGCTATTCTGATGATGATTCAAGTATGGAAGACTACCCAGATCCACAGTCAGCAAA
TCACATGAACAGTTCCCTGCTGTCTTTATATCGGAAAGGAAATCCTGATTCTGTTTCAAATACTCCTGAG
ATGGAGCAAAGAGAAACCACCTCTTCAACACCACGGATAAGTTCCAAAACAGGCTCCATTCCCTTGAAGA
CCCCTGCCAAAGATTCTGAAGGAGGATGGTTTATTGACAAAACCCCAAGTGTAAAGAAAGACAGTTTTTT
CTTGGACCTGTCATGTGAGAAAAGTAATCCTAAGAAGCCAATAACTGAGATACAGGATTCAAAAGATTCT
TCTCTTTTGGAGAGTGATATGAAACGGAAAGGCAAGCTAAAGAATAAAGGAAGCAAAAGGAAGAAAGAAG
ATCTTCAGGAAGTAGATGGAGAAATTGAAGCTGTCCTGCAAAAGAAAGCTAAAGCCAGGGGGTTAGAATT
CCAGATCTCCAACGTGAAGTTTGAAGATGTGGGAGGCAATGATATGACATTAAAAGAGGTCTGCAAGATG
CTCATACACATGCGTCACCCGGAGGTGTACCACCACCTGGGCGTCGTGCCCCCTCGTGGAGTTCTCCTTC
ATGGACCACCAGGCTGTGGGAAGACATTACTTGCACATGCAATTGCTGGGGAACTTGACCTGCCAATTTT
GAAAGTGGCTGCTCCAGAGATTGTGTCTGGAGTATCCGGAGAGTCTGAGCAGAAGCTGAGAGAACTATTT
GAGCAAGCTGTGTCAAATGCACCATGTATCATTTTCATTGATGAAATTGATGCTATTACCCCCAAAAGAG
AAGTGGCTTCAAAAGATATGGAACGAAGAATTGTAGCCCAACTCCTAACCTGCATGGATGATCTGAATAA
TGTGGCTGCTACAGCCCGGGTCCTAGTTATTGGAGCTACTAATCGACCAGACTCGTTAGACCCTGCTTTG
AGACGTGCGGGAAGGTTCGACCGAGAAATATGCCTAGGTATCCCAGATGAAGCATCCAGGGAAAGAATAC
TTCAAACATTGTGCAGAAAACTGAGGCTTCCTCAAGCTTTTGATTTCTGTCACTTAGCACACCTAACTCC
AGGCTTTGTTGGTGCTGATCTCATGGCACTGTGCCGAGAGGCAGCAATGTGTGCAGTCAATAGAGTCTTA
ATGAAGCTACAGGAACAGCAGAAGAAAAATCCTGAAATGGAAGATTTGCCATCTAAAGGAGTCCAGGAGG
AAAGGCTGGGAACTGAGCCCACTTCTGAAACACAGGATGAATTACAAAGGCTGCTGGGGTTGCTAAGAGA
CCAAGATCCCCTCTCAGAGGAGCAGATGCAAGGACTGTGCATTGAACTGAATGATTTCATTGTTGCTCTA
TCCTCAGTCCAACCCTCTGCCAAAAGGGAAGGCTTTGTCACTGTCCCTAATGTGACATGGGCAGATATTG
GTGCCCTGGAAGACATTAGAGAGGAGCTCACCATGGCAATATTGGCACCAGTACGCAACCCAGACCAGTT
CAAAGCTCTTGGATTGGTGACTCCAGCTGGGGTCCTCCTTGCTGGTCCTCCTGGCTGTGGGAAGACTCTG
CTGGCGAAGGCTGTTGCAAATGAGTCCGGACTAAATTTTATATCTGTCAAGGGCCCCGAATTACTAAACA
TGTATGTTGGTGAGAGTGAACGTGCTGTGCGACAAGTTTTTCAACGAGCCAAGAACTCAGCACCCTGTGT
GATATTCTTTGATGAAGTGGATGCTTTATGTCCTCGAAGATCAGACCGAGAGACAGGGGCAAGTGTCCGA
GTGGTGAATCAGCTACTTACAGAGATGGATGGTCTGGAAGCACGCCAGCAGGTTTTTATTATGGCAGCCA
CTAACAGGCCAGATATAATTGACCCTGCAATCCTGCGCCCGGGCCGCCTGGACAAAACACTGTTTGTGGG
TTTACCGCCCCCTGCAGATCGCCTTGCCATCTTAAAAACTATCACAAAAAATGGTACCAAACCACCACTG
GATGCAGATGTAAATTTGGAAGCAATTGCTGGTGACCTTCGCTGTGATTGCTATACGGGCGCAGATCTCT
CTGCTTTGGTACGAGAAGCTTCTATCTGTGCCCTGAGACAGGAAATGGCAAGACAGAAGAGTGGAAATGA
AAAAGGTGAACTCAAGGTTAGTCATAAGCATTTTGAAGAAGCTTTCAAGAAAGTAAGATCATCTATATCA
AAAAAGGATCAAATCATGTATGAACGTTTGCAGGAGTCCCTCAGCCGGTGA

Translation (856 aa):
MKPRPAGFVDNKLKQRVIQYLTSNKCGKYVDIGVLASDLQRVYSIDYGRRKRNAFRIQVEKVFSIISSEK
ELKNLTELEDEHLAKRARQGEEDNEYTESYSDDDSSMEDYPDPQSANHMNSSLLSLYRKGNPDSVSNTPE
MEQRETTSSTPRISSKTGSIPLKTPAKDSEGGWFIDKTPSVKKDSFFLDLSCEKSNPKKPITEIQDSKDS
SLLESDMKRKGKLKNKGSKRKKEDLQEVDGEIEAVLQKKAKARGLEFQISNVKFEDVGGNDMTLKEVCKM
LIHMRHPEVYHHLGVVPPRGVLLHGPPGCGKTLLAHAIAGELDLPILKVAAPEIVSGVSGESEQKLRELF
EQAVSNAPCIIFIDEIDAITPKREVASKDMERRIVAQLLTCMDDLNNVAATARVLVIGATNRPDSLDPAL
RRAGRFDREICLGIPDEASRERILQTLCRKLRLPQAFDFCHLAHLTPGFVGADLMALCREAAMCAVNRVL
MKLQEQQKKNPEMEDLPSKGVQEERLGTEPTSETQDELQRLLGLLRDQDPLSEEQMQGLCIELNDFIVAL
SSVQPSAKREGFVTVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTL
LAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVR
VVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPL
DADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSSIS
KKDQIMYERLQESLSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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