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Report for CCDS1335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1335.1 Public Homo sapiens 1 TOR1AIP1 24 110 108 CCDS HistoryNCBI Gene:26092Re-query CCDS DB by CCDS ID:1335.1Re-query CCDS DB by GeneID:26092See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000606911.7 ENSP00000476687.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000606911.7Link to Ensembl Protein Viewer:ENSP00000476687.1Re-query CCDS DB by Nucleotide ID:ENST00000606911Re-query CCDS DB by Protein ID:ENSP00000476687
Original member Current member NCBI NM_015602.4 NP_056417.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015602.4Link to Protein Sequence:NP_056417.2Re-query CCDS DB by Nucleotide ID:NM_015602Re-query CCDS DB by Protein ID:NP_056417Link to BLAST:NP_056417.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056417.2 583 Q5JTV8-1 583 100% 0 0

Chromosomal Locations for CCDS 1335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 179882503 179882977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179884692 179884769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179889313 179889369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179900126 179900167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179901302 179901388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179903966 179904022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179907823 179907864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179908605 179908673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179913998 179914054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 179917452 179918239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1752 nt):
ATGGCGGGCGACGGGCGGCGGGCAGAGGCGGTGCGGGAAGGATGGGGTGTGTACGTCACCCCCAGGGCCC
CC
ATCCGAGAGGGAAGGGGCCGGCTCGCCCCTCAAAATGGCGGCAGCAGCGATGCGCCTGCGTACAGAAC
T
CCTCCGTCGCGCCAGGGCCGGCGGGAAGTGAGGTTCTCGGACGAGCCGCCAGAAGTGTACGGCGACTTC
GAG
CCCCTGGTGGCCAAAGAAAGGTCCCCGGTGGGAAAACGAACCCGGCTAGAAGAGTTCCGGTCCGATT
CT
GCGAAAGAGGAAGTGAGAGAAAGCGCGTACTACCTTCGGTCTAGGCAGCGGAGGCAGCCGCGACCCCA
G
GAAACCGAGGAAATGAAGACGCGAAGGACTACCCGCCTTCAGCAGCAGCACTCAGAGCAGCCTCCGCTA
CAG
CCGTCTCCTGTTATGACCAGGAGAGGGCTGCGGGACTCTCATTCCTCTGAAGAGGATGAAGCATCTT
CC
CAAACTGATTTAAGCCAAACGATCTCAAAGAAAACTGTCAGGAGCATACAAGAGGCTCCAGTGAGTGA
A
GATCTTGTAATCAGGTTACGTCGACCCCCTCTAAGATACCCAAGATATGAAGCCACCAGTGTCCAACAG
AAG
GTCAATTTCTCTGAAGAAGGAGAAACTGAAGAAGATGATCAAGACAGCTCTCACAGCAGTGTCACTA
CT
GTTAAGGCCAGATCCAGGGATTCTGATGAATCTGGAGATAAAACCACCAGATCATCTAGTCAATATAT
A
GAATCATTTTGGCAGTCATCACAAAGTCAAAACTTCACAGCTCATGATAAGCAACCTTCAGTGCTAAGC
TCA
GGATATCAAAAAACTCCCCAGGAATGGGCCCCACAAACTGCAAGAATAAGGACCAGGATGCAAAATG
AC
AGCATTCTGAAATCAGAGCTTGGAAACCAGTCACCATCAACCTCCAGCCGACAAGTGACTGGACAACC
C
CAAAATGCATCTTTTGTCAAGAGGAACCGGTGGTGGCTACTTCCTCTGATAGCTGCTCTTGCCTCTGGG
AGT
TTTTGGTTCTTTAGTACTCCTGAGGTAGAAACCACTGCTGTTCAAGAGTTCCAGAACCAGATGAATC
AA
CTTAAGAATAAGTACCAAGGTCAAGATGAGAAGCTGTGGAAAAGGAGCCAAACATTCCTGGAAAAACA
T
CTTAATAGCTCCCATCCTCGGTCTCAGCCTGCTATCTTACTGCTCACTGCTGCCCGAGATGCTGAAGAA
GCA
CTTAGGTGTCTGAGTGAACAAATTGCTGATGCCTATTCTTCTTTTCGTAGTGTCCGTGCCATCCGGA
TT
GATGGGACAGATAAAGCTACTCAAGACAGTGATACTGTCAAACTAGAGGTAGACCAAGAACTGAGCAA
T
GGATTTAAGAATGGCCAGAATGCAGCTGTGGTACACCGCTTTGAGTCATTTCCCGCAGGCTCTACTTTG
ATC
TTCTACAAATATTGTGACCATGAAAACGCGGCCTTCAAAGATGTAGCCTTAGTCCTGACTGTCTTAT
TG
GAGGAAGAGACACTTGGAACAAGTCTAGGCCTAAAGGAAGTTGAAGAAAAAGTAAGAGATTTTCTTAA
A
GTCAAGTTCACCAATTCTAACACACCCAACTCCTACAATCATATGGACCCAGACAAACTGAATGGCCTC
TGG
AGCCGTATTTCTCACTTAGTTCTGCCTGTGCAACCTGAAAATGCCCTGAAAAGGGGCATCTGCTTAT
AA


Translation (583 aa):
MAGDGRRAEAVREGWGVYVTPRAPIREGRGRLAPQNGGSSDAPAYRTPPSRQGRREVRFSDEPPEVYGDF
E
PLVAKERSPVGKRTRLEEFRSDSAKEEVRESAYYLRSRQRRQPRPQETEEMKTRRTTRLQQQHSEQPPL
Q
PSPVMTRRGLRDSHSSE
EDEASSQTDLSQTISKKTVRSIQEAPVSEDLVIRLRRPPLRYPRYEATSVQQ
K
VNFSEE
GETEEDDQDSSHSSVTTVKARSRDSDESGDKTTRSSSQYIESFWQSSQSQNFTAHDKQPSVLS
S
GYQKTPQEWAPQTARIRTRMQ
NDSILKSELGNQSPSTSSRQVTGQPQNASFVKRNRWWLLPLIAALASG
S
FWFFSTPEVETTAVQEFQNQMNQLKNKYQGQDEKLWKRSQTFLEKHLNSSHPRSQPAILLLTAARDAEE
A
LRCLSEQIADAYSSFRSVRAIRIDGTDKATQDSDTVKLEVDQELSNGFKNGQNAAVVHRFESFPAGSTL
I
FYKYCDHENAAFKDVALVLTVLLEEETLGTSLGLKEVEEKVRDFLKVKFTNSNTPNSYNHMDPDKLNGL
W
SRISHLVLPVQPENALKRGICL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser