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Report for CCDS81157.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81157.1 Public Mus musculus X Pja1 23 108 98 CCDS HistoryNCBI Gene:18744Re-query CCDS DB by CCDS ID:81157.1Re-query CCDS DB by GeneID:18744See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81157.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000113790.7 ENSMUSP00000109421.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113790.7Link to Ensembl Protein Viewer:ENSMUSP00000109421.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113790Re-query CCDS DB by Protein ID:ENSMUSP00000109421
Original member NCBI NM_001290556.1 NP_001277485.1 Updated not alive Link to Nucleotide Sequence:NM_001290556.1Link to Protein Sequence:NP_001277485.1Re-query CCDS DB by Nucleotide ID:NM_001290556Re-query CCDS DB by Protein ID:NP_001277485
Current member NCBI NM_001290556.2 NP_001277485.1 Accepted alive Link to Nucleotide Sequence:NM_001290556.2Link to Protein Sequence:NP_001277485.1Re-query CCDS DB by Nucleotide ID:NM_001290556Re-query CCDS DB by Protein ID:NP_001277485Link to BLAST:NP_001277485.1

Chromosomal Locations for CCDS 81157.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 99466565 99467582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 99468123 99468301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGAGCCACCAGGAAAGGATTGCCAGCCAGAGGAGGACAACAGCCGAAGTCCCAATGCACAGATCAACTG
CCAATCAAAGCAAGAGGAGCCGGTCACCATTTGCCAGCACACGTCGTCGCTGGGATGACAGCGAGAGCTC
GGGAGCCAGCCTGGCTGTTGAGAGTGAGGATTATTCCAGTACTTCCAGGTGGCGGGATGCTGCCGATGCT
GAGGAGGCTCATGCCGAGGGCCTAGCCAGAAGAGGCCGAGGTGAGGCTGCCAGCAGCTCAGAGCCAAGGT
ATGCTGAAGACCAGGATGCCAGGAGTGAACAAGCGAAGGCAGACAAAGTGCCAAGACGGCGGCGAACCAT
GGCAGACCCTGACTTCTGGGCATACACCGACGATTACTACCGATACTACGAGGAAGATTCTGACAGCGAC
AAAGAGTGGATGGCTGCCCTGCGCAGGAAGTACCGAAGCCGAGAGCAACCCCAGTCCTCCAGCGGAGAAA
GCTGGGAGCTTCTGCCAGGAAAGGAAGAACTGGAACGTCAGCAAGCCGGAGCTGGGAGCCTCGCCAGTGC
TGGCAGCAATGGCAGTGGTTATCCTGAAGAAGTACAAGACCCATCTCTTCAGGAGGAAGAACAGGCCTCT
CTGGAAGAAGGAGAAATCCCTTGGCTTCGCTACAATGAGAATGAAAGCAGCAGCGAGGGTGATAATGAGT
CTACCCATGAGCTCATACAGCCTGGGATGTTCATGCTGGATGGAAACAACAACCTGGAAGATGACTCCAG
CGTGAGCGAAGACCTCGAAGTGGACTGGAGCCTGTTTGATGGGTTTGCCGATGGCTTGGGAGTGGCCGAA
GCCATCTCCTACGTGGATCCTCAGTTCCTCACCTACATGGCTCTGGAAGAGCGTCTGGCCCAGGCAATGG
AGACGGCCCTGGCACACTTGGAGTCTCTCGCCGTTGATGTCGAAGTGGCCAACCCACCAGCAAGCAAGGA
GAGCATTGATGCCCTTCCTGAGATCCTGGTCACCGAAGATCATGGTGCAGTGGGCCAGGAAATGTGCTGT
CCTATCTGCTGCAGCGAATATGTGAAGGGGGAGGTGGCAACTGAGCTACCATGCCACCACTATTTCCACA
AGCCCTGCGTGTCCATCTGGCTTCAGAAGTCTGGCACCTGCCCAGTGTGCCGCTGCATGTTCCCTCCCCC
GCTCTAA

Translation (398 aa):
MSHQERIASQRRTTAEVPMHRSTANQSKRSRSPFASTRRRWDDSESSGASLAVESEDYSSTSRWRDAADA
EEAHAEGLARRGRGEAASSSEPRYAEDQDARSEQAKADKVPRRRRTMADPDFWAYTDDYYRYYEEDSDSD
KEWMAALRRKYRSREQPQSSSGESWELLPGKEELERQQAGAGSLASAGSNGSGYPEEVQDPSLQEEEQAS
LEEGEIPWLRYNENESSSEGDNESTHELIQPGMFMLDGNNNLEDDSSVSEDLEVDWSLFDGFADGLGVAE
AISYVDPQFLTYMALEERLAQAMETALAHLESLAVDVEVANPPASKESIDALPEILVTEDHGAVGQEMCC
PICCSEYVKGEVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPPPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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