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Report for CCDS40964.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40964.1 Public Mus musculus X Igsf1 23 108 98 CCDS HistoryNCBI Gene:209268Re-query CCDS DB by CCDS ID:40964.1Re-query CCDS DB by GeneID:209268See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40964.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033442.13 ENSMUSP00000033442.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033442.13Link to Ensembl Protein Viewer:ENSMUSP00000033442.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000033442Re-query CCDS DB by Protein ID:ENSMUSP00000033442
Original member Current member NCBI NM_177591.4 NP_808259.2 Accepted alive Link to Nucleotide Sequence:NM_177591.4Link to Protein Sequence:NP_808259.2Re-query CCDS DB by Nucleotide ID:NM_177591Re-query CCDS DB by Protein ID:NP_808259Link to BLAST:NP_808259.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808259.2 1317 Q7TQA1-1 1317 100% 0 0

Chromosomal Locations for CCDS 40964.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49782817 49782952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49783100 49783223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49783612 49783890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49784022 49784309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49784506 49784793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49784972 49785259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49785988 49786275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49786859 49787137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49787358 49787648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49788033 49788065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49788148 49788218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49790082 49790202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49790515 49790766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49791287 49791580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49791815 49792099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49793904 49794191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49794492 49794773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49795123 49795149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49795279 49795318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3954 nt):
ATGATGCTTCGGACCTTCACTCTTTTGCTCCTTTGCATTTGGCTCAATCCGGGTATGACTTCACTGGCAG
TGGAGTCTCAACCAGAGCTATGGATAGAGTCCAACTACCCCCAGGCCCCTTGGGAGAACATCACACTCTG
GTGCAAAAGCCCCTCTCGGGTATCCAGCAAGTTCCTGCTTCTGAAGGATAACTCACAGATGACCTGGATT
CGTCCTCCTTACAAGACATTCCAAGTTTCATTCTTCATAGGTGCCCTTACTGAGTCCAATACAGGTCTTT
ATCGATGCTGCTACTGGAAGGAGAAAGGCTGGTCAAAACCCAGTAAAATTCTAGAGCTAGAAGCACCAGG
CCAACTCCCTAAACCCATCTTCTGGATCCAGGCAGAGACCCCCCCTCTTCCTGGATGCAATGTTAACATC
TTCTGCCATGGATGGCTCCAGGATTTGGTATTTATGCTGTTTAAAGAGGGATACACAGAGCCCGTAGATT
ACCAAGTCCCAACTGGGACAATGGCCATCTTCTCCATTGATAACTTGGCACCCGAGAATGAAGGGGTTTA
CATCTGCCGCACTCATATCCAGATGCTCCCCACTCTGTGGTCAGAGCCCAGCAATCCCCTGAAGTTGGTG
GTAGCAGGTCTCTACCCCAAACCAACTCTGACAGCCCATCCTGGGCCCATCCTGGCACCCGGAGAAAGCC
TGAGTCTCAGGTGTCAAGGGCCAATATATGGAATGACGTTTGCTTTAATGAGGTTGGAAGACTTGAAGAA
ATCATTTTACCACAAGAAGCCAATAAAAAATGAGGCATATTTCTACTTCCAGGATCTGAAGATACAGGAT
ACAGGGCACTACCTCTGTTTTTACTATGATGGGTCATACAGGGGCTCTCTGCTTAGTGATATCCTGAAAA
TCTGGGTGACTGACACTTTCCCTAAGACCTGGCTACTTGTTCAGCCCAGTCCTGTGATTCAAATGGGTCA
GAACGTGAGCCTGAGGTGTGGAGGACTGATGGATGGAGTGGGTCTTGCACTCTACAAGAAGGGAGAAGAA
AAGCCCCTTCAGTTTCTGGATGCCTCCAGCAACACTGGCAACAATTCATTCTTCCTAAAGAATGTGACCT
ACAGGGATGCTGGCATCTATAGCTGTCACTATTATCTTACTTGGAAGACATCCATTAAGATGGCAACATA
CAACACTGTGGAGCTGATGGTTGTAGCTTGGCCCAGTTCCGTGTTCAAAGTAGGAAAGACCATCACCCTT
CAGTGCCGAGTGTCTCATCCAGTGCTTGAATTTTCTTTGGAATGGGAAGAAAGAACAACATTCCAAAAAT
TCTCAGTAGATGGAGACTTCCTCATCACTGACATTGAAGGGCAAGGCACAGGAACCTACAGTTGCAGCTA
TCGTATTGAGGCACACCCTAACACCTGGTCACATCGCAGTAAGCCTCTGAAGTTGGTGGGACCAGCAGGC
TTCCTCACCTGGAATTCCATTCTGAATGAAGCTGTCAGGGTGTCCTTAACCATGCAGCTTGCTTCCTTGC
TCTTGCTAGTGGTATGGATCCGGTGGAAGTGTCGGAGACTGAGGCTCAGAGAAGCCTGGTTGTTGGGAAC
AGCTCAAGGGGTCGCCATGCTCTTCATACTCATGGCCCTTCTTTGCTGTGGACTGTGCAATGGGGCATTG
ACAGAGGAGATTGAAATAGTCATGCCAACCCCTAAGCCTGAACTGTGGGCAGAGACGAACTTCCCTCTGG
CCCCGTGGAAGAACTTAACCCTCTGGTGCAGAAGCCCATCTGGCTCAACTAAGGAGTTTGTGTTACTGAA
GGACGGGACCGGGTGGATTGCAACCCGCCCGGCCTCAGAGCAGGTCCGGGCTGCCTTCCCTCTTGGCGCC
CTGACCCACAGCCACACCGGGAGTTACCATTGCCATTCATGGGAGGAGATGGCTGTGTCGGAGCCTAGTG
AAGCGCTTGAACTAGTGGGGACAGACATCCTTCCCAAACCTGTCATTTCGGCTTCCCTTCCAATCCGGGG
CCAGGAACTGCAGATCCGCTGTAAAGGATGGCTGGAAGGTTTGGGGTTTGCTCTGTATAAGAAGGGAGAG
CAGGAACCTGTCCAGCAACTTGGTGCTGTTGGGAGAGAAGCCTTCTTTACAATTCAAAGAATGGAGGATA
AAGATGAGGGCAATTACAGCTGCCGCACACACACTGAAATGCAGCCCTTCAAGTGGTCTGAGCCCAGTGA
GCCCCTGGAGCTTGTCATAAAAGAAATGTACCCCAAGCCTTTCTTCAAGACCTGGGCTAGCCCTGTGGTC
ACTCCTGGTTCCCGAGTGACTTTCAATTGTTCCACCTCCCATGAACACATGAGCTTTATTCTTTATAAGG
ATGGCAATGAAATTGCATCCAGTGACCTAGCCTGGGGAAACCCAGGAGGCAGTACAGCCCACTTTCTGAT
CATTTCAGTGGGCATTGGTGATGGAGGAAACTATAGCTGTCGTTATTATGACTTTTCCATCTGGTCTGAG
CCCAGCAACCCTGTGGAGCTCGTTGTGACAGAATTCTACCCTAAACCCACACTCCTGGCACAGCCAGGCC
CTGTGGTGCTTCCTGGGAAGAATGTGACCCTGCGCTGCCAAGGAATTTTCCAGGGCATGAGGTTTGCCCT
CTTGCAGGAGGGTACTCATACCCCTTTACAGTTCCAAAGTACCTCGGGGACCTCAGCTGACTTCCTCCTC
CACACTGTTGGAGCACAGGACTTTGGGAACTACAGCTGTGTCTACTATGAGACAACCATGTCGAACAGGG
GCTCATCCCTTAGCACCCCTCTTATGATCTGGGTGACTGATACATTCCCCAGACCATGGTTGTCTGCTGA
GCCTAGTTCTGTGGTCACCATGGGGCAGAATGTTACTCTATGGTGTCAAGGACCAGTCCGTGGAGTTGGG
TACATTCTGCACAAAGAAGGAGAAGCCACTTCGATGCAGCTTTGGGGGTCCACTAGCAATGAAGGAGCAT
TCCCTATCATCAATATATCTGGTGCTAGCATAGGACGTTATAGCTGCTGTTACCACCCTGACTGGATGAG
CCCTATCAAGATACAGCCTAGCAACACTCTGGAACTCATAGTCACTGGTTTACTCCCTAAGCCCAGCCTG
TTAGTCCAGCCTGGTCCCATGGTAGCCCCTGGAGAAAACGTGACTCTTCAATGTCAAGGAGAACTGCCAG
ATTCAACATTTGTCCTGTTGAAGGAGGGGACGCGACAGCCCTTAGAACAACAGAGGCCAAGTGGGTACAG
AGCTGACTTCTGGATGCCAGTGGTGAGGGATCAAGATTCTGGTGTTTACAGCTGTGTTTATTATCTGGAT
TCTGCTCCCCTTGTGGCTTCGAATCACAGCAACTCTCTAGAGATCTGGGTGACTGATAAGCCCCCTAAAC
CCTCTCTGTCAGCCTGGCCCAGCACCATCTTCAAACTAGGCAAGGACATCACCCTTCAGTGCCGAGGACC
CCTGCCAGGAGTTGAATTTGTGCTAGAGCATGATGGAGAAGAGGCTCCACAACAGTTTTCCGAGGATGGA
GATTTTGTCATCGACAACTTGGAAGGGAAAGGCATTGGAAACTACAGTTGCAGCTACCGGCTGCAGGCCT
ACCCTGATATCTGGTCAGAGCCCAGCGATACCCTGGAGCTGGTTGGAGCTGCAGGGCCTGTTGCTCAAGA
GTGCACTGTGGGTAACATTGTCCGAAGTACCCTGATTGTGGTGGTTGTGGTAGCCTTGGGGATAGTGCTA
GCCGTAGAGTGGAAGAAGTGGCCTCGACTTCGGACTAGGGGCTCTGAGACAGATGGAAGAGATCAGACCG
TAGTCCTTGAAGAGTGTAACCAAGAAGGAGAACCAGGCACTACCACCAATTCTCCTTCATCTGCCTCGCA
AGAAGTCTCAGTGGAACTGACAGTTCCAATATAA

Translation (1317 aa):
MMLRTFTLLLLCIWLNPGMTSLAVESQPELWIESNYPQAPWENITLWCKSPSRVSSKFLLLKDNSQMTWI
RPPYKTFQVSFFIGALTESNTGLYRCCYWKEKGWSKPSKILELEAPGQLPKPIFWIQAETPPLPGCNVNI
FCHGWLQDLVFMLFKEGYTEPVDYQVPTGTMAIFSIDNLAPENEGVYICRTHIQMLPTLWSEPSNPLKLV
VAGLYPKPTLTAHPGPILAPGESLSLRCQGPIYGMTFALMRLEDLKKSFYHKKPIKNEAYFYFQDLKIQD
TGHYLCFYYDGSYRGSLLSDILKIWVTDTFPKTWLLVQPSPVIQMGQNVSLRCGGLMDGVGLALYKKGEE
KPLQFLDASSNTGNNSFFLKNVTYRDAGIYSCHYYLTWKTSIKMATYNTVELMVVAWPSSVFKVGKTITL
QCRVSHPVLEFSLEWEERTTFQKFSVDGDFLITDIEGQGTGTYSCSYRIEAHPNTWSHRSKPLKLVGPAG
FLTWNSILNEAVRVSLTMQLASLLLLVVWIRWKCRRLRLREAWLLGTAQGVAMLFILMALLCCGLCNGAL
TEEIEIVMPTPKPELWAETNFPLAPWKNLTLWCRSPSGSTKEFVLLKDGTGWIATRPASEQVRAAFPLGA
LTHSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASLPIRGQELQIRCKGWLEGLGFALYKKGE
QEPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEMQPFKWSEPSEPLELVIKEMYPKPFFKTWASPVV
TPGSRVTFNCSTSHEHMSFILYKDGNEIASSDLAWGNPGGSTAHFLIISVGIGDGGNYSCRYYDFSIWSE
PSNPVELVVTEFYPKPTLLAQPGPVVLPGKNVTLRCQGIFQGMRFALLQEGTHTPLQFQSTSGTSADFLL
HTVGAQDFGNYSCVYYETTMSNRGSSLSTPLMIWVTDTFPRPWLSAEPSSVVTMGQNVTLWCQGPVRGVG
YILHKEGEATSMQLWGSTSNEGAFPIINISGASIGRYSCCYHPDWMSPIKIQPSNTLELIVTGLLPKPSL
LVQPGPMVAPGENVTLQCQGELPDSTFVLLKEGTRQPLEQQRPSGYRADFWMPVVRDQDSGVYSCVYYLD
SAPLVASNHSNSLEIWVTDKPPKPSLSAWPSTIFKLGKDITLQCRGPLPGVEFVLEHDGEEAPQQFSEDG
DFVIDNLEGKGIGNYSCSYRLQAYPDIWSEPSDTLELVGAAGPVAQECTVGNIVRSTLIVVVVVALGIVL
AVEWKKWPRLRTRGSETDGRDQTVVLEECNQEGEPGTTTNSPSSASQEVSVELTVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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