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Report for CCDS40965.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
40965.1 Public Mus musculus X Igsf1 23 108 98 CCDS HistoryNCBI Gene:209268Re-query CCDS DB by CCDS ID:40965.1Re-query CCDS DB by GeneID:209268See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 40965.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000114893.7 ENSMUSP00000110543.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114893.7Link to Ensembl Protein Viewer:ENSMUSP00000110543.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000114893Re-query CCDS DB by Protein ID:ENSMUSP00000110543
Original member Current member NCBI NM_183336.2 NP_899179.1 Accepted alive Link to Nucleotide Sequence:NM_183336.2Link to Protein Sequence:NP_899179.1Re-query CCDS DB by Nucleotide ID:NM_183336Re-query CCDS DB by Protein ID:NP_899179Link to BLAST:NP_899179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_899179.1 775 Q7TQA1-5 775 100% 0 0

Chromosomal Locations for CCDS 40965.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 49782817 49782952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49783100 49783223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49783612 49783890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49784022 49784309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49784506 49784793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49784972 49785259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49785988 49786275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49786859 49787137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49787358 49787648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49788033 49788065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 49788148 49788181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2328 nt):
ATGCTCTTCATACTCATGGCCCTTCTTTGCTGTGGACTGTGCAATGGGGCATTGACAGAGGAGATTGAAA
TAGTCATGCCAACCCCTAAGCCTGAACTGTGGGCAGAGACGAACTTCCCTCTGGCCCCGTGGAAGAACTT
AACCCTCTGGTGCAGAAGCCCATCTGGCTCAACTAAGGAGTTTGTGTTACTGAAGGACGGGACCGGGTGG
ATTGCAACCCGCCCGGCCTCAGAGCAGGTCCGGGCTGCCTTCCCTCTTGGCGCCCTGACCCACAGCCACA
CCGGGAGTTACCATTGCCATTCATGGGAGGAGATGGCTGTGTCGGAGCCTAGTGAAGCGCTTGAACTAGT
GGGGACAGACATCCTTCCCAAACCTGTCATTTCGGCTTCCCTTCCAATCCGGGGCCAGGAACTGCAGATC
CGCTGTAAAGGATGGCTGGAAGGTTTGGGGTTTGCTCTGTATAAGAAGGGAGAGCAGGAACCTGTCCAGC
AACTTGGTGCTGTTGGGAGAGAAGCCTTCTTTACAATTCAAAGAATGGAGGATAAAGATGAGGGCAATTA
CAGCTGCCGCACACACACTGAAATGCAGCCCTTCAAGTGGTCTGAGCCCAGTGAGCCCCTGGAGCTTGTC
ATAAAAGAAATGTACCCCAAGCCTTTCTTCAAGACCTGGGCTAGCCCTGTGGTCACTCCTGGTTCCCGAG
TGACTTTCAATTGTTCCACCTCCCATGAACACATGAGCTTTATTCTTTATAAGGATGGCAATGAAATTGC
ATCCAGTGACCTAGCCTGGGGAAACCCAGGAGGCAGTACAGCCCACTTTCTGATCATTTCAGTGGGCATT
GGTGATGGAGGAAACTATAGCTGTCGTTATTATGACTTTTCCATCTGGTCTGAGCCCAGCAACCCTGTGG
AGCTCGTTGTGACAGAATTCTACCCTAAACCCACACTCCTGGCACAGCCAGGCCCTGTGGTGCTTCCTGG
GAAGAATGTGACCCTGCGCTGCCAAGGAATTTTCCAGGGCATGAGGTTTGCCCTCTTGCAGGAGGGTACT
CATACCCCTTTACAGTTCCAAAGTACCTCGGGGACCTCAGCTGACTTCCTCCTCCACACTGTTGGAGCAC
AGGACTTTGGGAACTACAGCTGTGTCTACTATGAGACAACCATGTCGAACAGGGGCTCATCCCTTAGCAC
CCCTCTTATGATCTGGGTGACTGATACATTCCCCAGACCATGGTTGTCTGCTGAGCCTAGTTCTGTGGTC
ACCATGGGGCAGAATGTTACTCTATGGTGTCAAGGACCAGTCCGTGGAGTTGGGTACATTCTGCACAAAG
AAGGAGAAGCCACTTCGATGCAGCTTTGGGGGTCCACTAGCAATGAAGGAGCATTCCCTATCATCAATAT
ATCTGGTGCTAGCATAGGACGTTATAGCTGCTGTTACCACCCTGACTGGATGAGCCCTATCAAGATACAG
CCTAGCAACACTCTGGAACTCATAGTCACTGGTTTACTCCCTAAGCCCAGCCTGTTAGTCCAGCCTGGTC
CCATGGTAGCCCCTGGAGAAAACGTGACTCTTCAATGTCAAGGAGAACTGCCAGATTCAACATTTGTCCT
GTTGAAGGAGGGGACGCGACAGCCCTTAGAACAACAGAGGCCAAGTGGGTACAGAGCTGACTTCTGGATG
CCAGTGGTGAGGGATCAAGATTCTGGTGTTTACAGCTGTGTTTATTATCTGGATTCTGCTCCCCTTGTGG
CTTCGAATCACAGCAACTCTCTAGAGATCTGGGTGACTGATAAGCCCCCTAAACCCTCTCTGTCAGCCTG
GCCCAGCACCATCTTCAAACTAGGCAAGGACATCACCCTTCAGTGCCGAGGACCCCTGCCAGGAGTTGAA
TTTGTGCTAGAGCATGATGGAGAAGAGGCTCCACAACAGTTTTCCGAGGATGGAGATTTTGTCATCGACA
ACTTGGAAGGGAAAGGCATTGGAAACTACAGTTGCAGCTACCGGCTGCAGGCCTACCCTGATATCTGGTC
AGAGCCCAGCGATACCCTGGAGCTGGTTGGAGCTGCAGGGCCTGTTGCTCAAGAGTGCACTGTGGGTAAC
ATTGTCCGAAGTACCCTGATTGTGGTGGTTGTGGTAGCCTTGGGGATAGTGCTAGCCGTAGAGTGGAAGA
AGTGGCCTCGACTTCGGACTAGGGGCTCTGAGACAGATGGAAGAGATCAGACCGTAGTCCTTGAAGAGTG
TAACCAAGAAGGAGAACCAGGCACTACCACCAATTCTCCTTCATCTGCCTCGCAAGAAGTCTCAGTGGAA
CTGACAGTTCCAATATAA

Translation (775 aa):
MLFILMALLCCGLCNGALTEEIEIVMPTPKPELWAETNFPLAPWKNLTLWCRSPSGSTKEFVLLKDGTGW
IATRPASEQVRAAFPLGALTHSHTGSYHCHSWEEMAVSEPSEALELVGTDILPKPVISASLPIRGQELQI
RCKGWLEGLGFALYKKGEQEPVQQLGAVGREAFFTIQRMEDKDEGNYSCRTHTEMQPFKWSEPSEPLELV
IKEMYPKPFFKTWASPVVTPGSRVTFNCSTSHEHMSFILYKDGNEIASSDLAWGNPGGSTAHFLIISVGI
GDGGNYSCRYYDFSIWSEPSNPVELVVTEFYPKPTLLAQPGPVVLPGKNVTLRCQGIFQGMRFALLQEGT
HTPLQFQSTSGTSADFLLHTVGAQDFGNYSCVYYETTMSNRGSSLSTPLMIWVTDTFPRPWLSAEPSSVV
TMGQNVTLWCQGPVRGVGYILHKEGEATSMQLWGSTSNEGAFPIINISGASIGRYSCCYHPDWMSPIKIQ
PSNTLELIVTGLLPKPSLLVQPGPMVAPGENVTLQCQGELPDSTFVLLKEGTRQPLEQQRPSGYRADFWM
PVVRDQDSGVYSCVYYLDSAPLVASNHSNSLEIWVTDKPPKPSLSAWPSTIFKLGKDITLQCRGPLPGVE
FVLEHDGEEAPQQFSEDGDFVIDNLEGKGIGNYSCSYRLQAYPDIWSEPSDTLELVGAAGPVAQECTVGN
IVRSTLIVVVVVALGIVLAVEWKKWPRLRTRGSETDGRDQTVVLEECNQEGEPGTTTNSPSSASQEVSVE
LTVPI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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