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Report for CCDS39989.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39989.1 Public Mus musculus 7 Mfge8 23 108 98 CCDS HistoryNCBI Gene:17304Re-query CCDS DB by CCDS ID:39989.1Re-query CCDS DB by GeneID:17304See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39989.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107409.4 ENSMUSP00000103032.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107409.4Link to Ensembl Protein Viewer:ENSMUSP00000103032.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000107409Re-query CCDS DB by Protein ID:ENSMUSP00000103032
Original member Current member NCBI NM_001045489.1 NP_001038954.1 Accepted alive Link to Nucleotide Sequence:NM_001045489.1Link to Protein Sequence:NP_001038954.1Re-query CCDS DB by Nucleotide ID:NM_001045489Re-query CCDS DB by Protein ID:NP_001038954Link to BLAST:NP_001038954.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001038954.1 426 P21956-2 426 100% 0 0

Chromosomal Locations for CCDS 39989.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79134409 79134546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79134652 79134801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79136657 79136841 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79141645 79141789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79142402 79142554 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79142869 79143050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79145247 79145378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79145622 79145744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79148895 79148967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1281 nt):
ATGCAGGTCTCCCGTGTGCTGGCCGCGCTGTGCGGCATGCTACTCTGCGCCTCTGGCCTCTTCGCCGCGT
CTGGTGACTTCTGTGACTCCAGCCTGTGCCTGAACGGTGGCACCTGCTTGACGGGCCAAGACAATGACAT
CTACTGCCTCTGCCCTGAAGGCTTCACAGGCCTTGTGTGCAATGAGACTGAGAGAGGACCATGCTCCCCA
AACCCTTGCTACAATGATGCCAAATGTCTGGTGACTTTGGACACACAGCGTGGGGACATCTTCACCGAAT
ACATCTGCCAGTGCCCTGTGGGCTACTCGGGCATCCACTGTGAAACCGGTTGTTCTACACAGCTGGGCAT
GGAAGGGGGCGCCATTGCTGATTCACAGATTTCCGCCTCGTCTGTGTATATGGGTTTCATGGGCTTGCAG
CGCTGGGGCCCGGAGCTGGCTCGTCTGTACCGCACAGGGATCGTCAATGCCTGGACAGCCAGCAACTATG
ATAGCAAGCCCTGGATCCAGGTGAACCTTCTGCGGAAGATGCGGGTATCAGGTGTGATGACGCAGGGTGC
CAGCCGTGCCGGGAGGGCGGAGTACCTGAAGACCTTCAAGGTGGCTTACAGCCTCGACGGACGCAAGTTT
GAGTTCATCCAGGATGAAAGCGGTGGAGACAAGGAGTTTTTGGGTAACCTGGACAACAACAGCCTGAAGG
TTAACATGTTCAACCCGACTCTGGAGGCACAGTACATAAAGCTGTACCCTGTTTCGTGCCACCGCGGCTG
CACCCTCCGCTTCGAGCTCCTGGGCTGTGAGTTGCACGGATGTTCTGAGCCCCTGGGCCTGAAGAATAAC
ACAATTCCTGACAGCCAGATGTCAGCCTCCAGCAGCTACAAGACATGGAACCTGCGTGCTTTTGGCTGGT
ACCCCCACTTGGGAAGGCTGGATAATCAGGGCAAGATCAATGCCTGGACGGCTCAGAGCAACAGTGCCAA
GGAATGGCTGCAGGTTGACCTGGGCACTCAGAGGCAAGTGACAGGAATCATCACCCAGGGGGCCCGTGAC
TTTGGCCACATCCAGTATGTGGCGTCCTACAAGGTAGCCCACAGTGATGATGGTGTGCAGTGGACTGTAT
ATGAGGAGCAAGGAAGCAGCAAGGTCTTCCAGGGCAACTTGGACAACAACTCCCACAAGAAGAACATCTT
CGAGAAACCCTTCATGGCTCGCTACGTGCGTGTCCTTCCAGTGTCCTGGCATAACCGCATCACCCTGCGC
CTGGAGCTGCTGGGCTGTTAA

Translation (426 aa):
MQVSRVLAALCGMLLCASGLFAASGDFCDSSLCLNGGTCLTGQDNDIYCLCPEGFTGLVCNETERGPCSP
NPCYNDAKCLVTLDTQRGDIFTEYICQCPVGYSGIHCETGCSTQLGMEGGAIADSQISASSVYMGFMGLQ
RWGPELARLYRTGIVNAWTASNYDSKPWIQVNLLRKMRVSGVMTQGASRAGRAEYLKTFKVAYSLDGRKF
EFIQDESGGDKEFLGNLDNNSLKVNMFNPTLEAQYIKLYPVSCHRGCTLRFELLGCELHGCSEPLGLKNN
TIPDSQMSASSSYKTWNLRAFGWYPHLGRLDNQGKINAWTAQSNSAKEWLQVDLGTQRQVTGIITQGARD
FGHIQYVASYKVAHSDDGVQWTVYEEQGSSKVFQGNLDNNSHKKNIFEKPFMARYVRVLPVSWHNRITLR
LELLGC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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