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Report for CCDS51817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51817.1 Public Mus musculus 6 Rtkn 23 108 98 CCDS HistoryNCBI Gene:20166Re-query CCDS DB by CCDS ID:51817.1Re-query CCDS DB by GeneID:20166See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065512.10 ENSMUSP00000065571.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065512.10Link to Ensembl Protein Viewer:ENSMUSP00000065571.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065512Re-query CCDS DB by Protein ID:ENSMUSP00000065571
Original member NCBI NM_001136227.1 NP_001129699.1 Updated not alive Link to Nucleotide Sequence:NM_001136227.1Link to Protein Sequence:NP_001129699.1Re-query CCDS DB by Nucleotide ID:NM_001136227Re-query CCDS DB by Protein ID:NP_001129699
Current member NCBI NM_001136227.2 NP_001129699.1 Accepted alive Link to Nucleotide Sequence:NM_001136227.2Link to Protein Sequence:NP_001129699.1Re-query CCDS DB by Nucleotide ID:NM_001136227Re-query CCDS DB by Protein ID:NP_001129699Link to BLAST:NP_001129699.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001129699.1 564 Q8C6B2-1 564 100% 0 0

Chromosomal Locations for CCDS 51817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83135949 83136059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83145931 83146130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83147489 83147550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83147652 83147705 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83147828 83147945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83148106 83148315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83149464 83149558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83149672 83149778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83149972 83150100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83150908 83151076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83151237 83151341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83151886 83152220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1695 nt):
ATGTTCTCTCGAAACCATCGGAGTCGGATCACAGTGGCCAGGGGCTCCGCCCTGGAGATGGAGTTCAAAC
GCGGCCGCTTCCGACTTAGTTTCTTCAGCGAGTCGCCGGAGGACACAGAGCTGCAGAGGAAACTAGATCA
TGAGATCCGGATGAGGGATGGGGCCTGCAAGCTGCTGGCAGCCTGCTCCCAGCGAGAGCAGGCTCTGGAA
GCCACCAAGAGCCTGCTGGTGTGCAACAGCCGTATTCTCAGCTACATGGGTGAGCTGCAGCGGCGAAAGG
AGGCCCAGGTGCTGGAGAAGACAGGCAGGCGACCTTCGGACAGTGTGCAGCCTGCTCAGCACTCCCCTTG
CCGTGGCCGGGTCTGCATCTCTGACCTCCGGATCCCACTCATGTGGAAGGATACAGAGTATTTCAAGAAC
AAAGGCGACCTGCACCGCTGGGCTGTGTTCCTGCTGCTGCAGATTGGGGAACAGATTCAGGACACAGAGA
TGGTCCTGGTAGACAGGACCCTCACAGACATCTCCTTTCAGAATAATGTGCTTTTTGCTGAGGCAGAGCC
TGACTTTGAACTGCGGCTGGAGCTGTATGGGGCCTGTGTGGAAGAGGAGGGAGCCCTGGCTGGTGCTCCC
AAGAGGCTTGCCACCAAACTCAGTAGCTCCCTGGGCCGTTCCTCGGGGAAGAGAGTCAGGGCATCGCTGG
ACAGTGCTGGGGCCTCCGGGAACAGTCCCGTCCTGTTACCTACCCCAGCTGTGGGAGGTCCTCGATTCCA
CCTCTTGGCCCACACCACTCTTACCCTAGAAGAAGTGCAAGATGGATTCCGTACACATGACCTCACGCTC
ACCAGTCATGAGGAGAACCCTGCCTGGCTACCCCTTTATGGCAGCGTGTGTTGCCGCCTGGCAGCTCAGC
CTCTCTGCATGATCCAGCCCACTGCAAGTGGTGCCCTTAGGGTGCAGCAAGCCGGGGAGCTGCAGAATGG
GACACTGGTACATGGAGTCCTGAAAGGCACAAACCTCTTTTGTTACTGGAGATCTGAGGATGCAGACACT
GGGCAAGAACCACTGTTCACTATCGTCATCAACAAGGAGACTAGGGTCCGGGCAGGTGAGTTGGAGCAGG
CCCCAGAGTGGCCTTTCACCCTCAGCATCAGCAACAAGTATGGGGATGATGAGGTGACAAACACCCTCCA
GCTGGAGAGCAGAGAAGCCCTGCAGAACTGGATGGAGGCGCTTTGGCAGCTCTTCTTTGACATGAGCCAG
TGGAGGCACTGTTGTGATGAAGTCATGAAGATCGAAACTCCTGCGCCCCGGAAACCACCCCAAGCCCTGG
CCAAGCAGGGGTCCTTATACCACGAGATGGCCATTGAGCCGCTAGACGACATCGCAGCTGTGACAGACAT
CCTGGCCCAGCGGGAGGGCACAAGGCTGGAGCCATCCCCACCCTGGCTAGCAATGTTTACAGACCAGCCT
GCCTTGCCTAGCTCCTGCTCGCCTGCCTCAGTGGCCCCAGTCCCAACCTGGATGCAACCCCTGCCCTGGG
GAAGACCCCGAACCTTTTCCCTGGATGCTGCCCCTGCAGACCACTCCCTTGGGCCTTCTCGCTCGGTTGC
ACCCCTTCCCCCGCAGAGATCCCCCAAATCCAGAGGTTTCTACAGCAAAAGCCAGCTCGGCCCATGGCTC
CAGTCCCCAGTGTGA

Translation (564 aa):
MFSRNHRSRITVARGSALEMEFKRGRFRLSFFSESPEDTELQRKLDHEIRMRDGACKLLAACSQREQALE
ATKSLLVCNSRILSYMGELQRRKEAQVLEKTGRRPSDSVQPAQHSPCRGRVCISDLRIPLMWKDTEYFKN
KGDLHRWAVFLLLQIGEQIQDTEMVLVDRTLTDISFQNNVLFAEAEPDFELRLELYGACVEEEGALAGAP
KRLATKLSSSLGRSSGKRVRASLDSAGASGNSPVLLPTPAVGGPRFHLLAHTTLTLEEVQDGFRTHDLTL
TSHEENPAWLPLYGSVCCRLAAQPLCMIQPTASGALRVQQAGELQNGTLVHGVLKGTNLFCYWRSEDADT
GQEPLFTIVINKETRVRAGELEQAPEWPFTLSISNKYGDDEVTNTLQLESREALQNWMEALWQLFFDMSQ
WRHCCDEVMKIETPAPRKPPQALAKQGSLYHEMAIEPLDDIAAVTDILAQREGTRLEPSPPWLAMFTDQP
ALPSSCSPASVAPVPTWMQPLPWGRPRTFSLDAAPADHSLGPSRSVAPLPPQRSPKSRGFYSKSQLGPWL
QSPV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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