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Report for CCDS39272.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39272.1 Public Mus musculus 5 Rsrc2 23 108 98 CCDS HistoryNCBI Gene:208606Re-query CCDS DB by CCDS ID:39272.1Re-query CCDS DB by GeneID:208606See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 39272.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000057795.11 ENSMUSP00000049942.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000057795.11Link to Ensembl Protein Viewer:ENSMUSP00000049942.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000057795Re-query CCDS DB by Protein ID:ENSMUSP00000049942
Original member Current member EBI ENSMUST00000050827.13 ENSMUSP00000050563.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050827.13Link to Ensembl Protein Viewer:ENSMUSP00000050563.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050827Re-query CCDS DB by Protein ID:ENSMUSP00000050563
Original member Current member NCBI NM_001359860.1 NP_001346789.1 Accepted alive Link to Nucleotide Sequence:NM_001359860.1Link to Protein Sequence:NP_001346789.1Re-query CCDS DB by Nucleotide ID:NM_001359860Re-query CCDS DB by Protein ID:NP_001346789Link to BLAST:NP_001346789.1
Original member Current member NCBI NM_001359861.1 NP_001346790.1 Accepted alive Link to Nucleotide Sequence:NM_001359861.1Link to Protein Sequence:NP_001346790.1Re-query CCDS DB by Nucleotide ID:NM_001359861Re-query CCDS DB by Protein ID:NP_001346790Link to BLAST:NP_001346790.1
Original member Current member NCBI NM_025438.2 NP_079714.1 Accepted alive Link to Nucleotide Sequence:NM_025438.2Link to Protein Sequence:NP_079714.1Re-query CCDS DB by Nucleotide ID:NM_025438Re-query CCDS DB by Protein ID:NP_079714Link to BLAST:NP_079714.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346789.1 376 A2RTL5 376 100% 0 0
NP_001346790.1 376 A2RTL5 376 100% 0 0
NP_079714.1 376 A2RTL5 376 100% 0 0

Chromosomal Locations for CCDS 39272.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 123729177 123729356 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123730455 123730544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123731037 123731269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123733556 123733635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123736559 123736681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123739492 123739695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123740672 123740884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 123742779 123742786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1131 nt):
ATGATAAGAACCAACTTCTTGTTAAAACAGGGAAGAAGACATGAGTCCAAAGATAAGTCCTCTAAGAGAC
ACAAGTCTGAGGAGCACAATGACAAAGAACATTCTTCTGACAAAGGAAGAGAGCGATTAAATTCATCTGA
GAATGGTGAGGACAGACATAAACGCAAAGAAAGGAAGTCATCACGGGGCAGAAGTCACTCAAGGTCTAGA
TCGCGTGAAAGGCGCCATCGCAGTAGAAGCAGGGAAAGGAAGAAGTCTCGATCGAGGAGTAGGGATCGGA
AAAAGTCTCGATCCAGAAGCAGAGACAGGAAGAAGTCAAGATCTAGAAGCAGGGATAGGAAACGAAGGAT
CAGAACTCGTTCCCGATCCAGATCCAGACACAGGCATAGGACTAGAAGCAGGAGCAGATCAAGGAGTCGA
AGTCGAGATAGAAAGAAGAGAATTGAAAAACCAAGAAGATTTAGCAGAAGCCTAAGCCGGACACCTAGTC
CACCTCCCTTCAGAGGCAGAAACACAGCAATGGACGCTCAAGAAGCACTAGCTAGGAGATTAGAAAGGGC
AAAGAAATTACAAGAACAACGAGAAAAGGAAATGGTTGAAAAGCAGAAACAACAAGAAATGGCTGCAGCA
GCTGCAGCCACTGGAGGTTCAGTTCTTAATGTTGCTGCACTGTTGGCATCAGGAACGCAGGTTACTCCTC
AGATAGCTATGGCAGCTCAAATGGCAGCCCTGCAAGCTAAAGCCTTGGCAGAGACTGGCATAGCAGTGCC
CAGCTACTACAACCCAGCAGCTGTGAATCCAATGAAGTTTGCTGAGCAAGAGAAAAAGAGGAAAATGCTC
TGGCAAGGCAAGAAAGAAGGCGACAAATCTCAGTCTGCTGAAATCTGGGAAAAATTAAATTTTGGAAACA
AGGACCAAAATGTCAAATTTAGAAAGTTAATGGGCATTAAGAGTGAAGATGAAGCTGGCTGTAGCTCCGT
TGATGAAGAAAGTTATAAGACTTTAAAGCAACAAGAAGAAGTTTTTCGCAATCTTGATGCTCAGTATGAA
ATGGCAAGATCACAAACCCACACACAAAGAGGAATGGGTTTGGGTTTCACATCTTCAATGCGTGGAATGG
ATACAGTTTGA

Translation (376 aa):
MIRTNFLLKQGRRHESKDKSSKRHKSEEHNDKEHSSDKGRERLNSSENGEDRHKRKERKSSRGRSHSRSR
SRERRHRSRSRERKKSRSRSRDRKKSRSRSRDRKKSRSRSRDRKRRIRTRSRSRSRHRHRTRSRSRSRSR
SRDRKKRIEKPRRFSRSLSRTPSPPPFRGRNTAMDAQEALARRLERAKKLQEQREKEMVEKQKQQEMAAA
AAATGGSVLNVAALLASGTQVTPQIAMAAQMAALQAKALAETGIAVPSYYNPAAVNPMKFAEQEKKRKML
WQGKKEGDKSQSAEIWEKLNFGNKDQNVKFRKLMGIKSEDEAGCSSVDEESYKTLKQQEEVFRNLDAQYE
MARSQTHTQRGMGLGFTSSMRGMDTV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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