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Report for CCDS51484.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51484.1 Public Mus musculus 5 Slc2a9 23 108 98 CCDS HistoryNCBI Gene:117591Re-query CCDS DB by CCDS ID:51484.1Re-query CCDS DB by GeneID:117591See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51484.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000067872.11 ENSMUSP00000066872.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000067872.11Link to Ensembl Protein Viewer:ENSMUSP00000066872.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000067872Re-query CCDS DB by Protein ID:ENSMUSP00000066872
Original member Current member EBI ENSMUST00000155634.7 ENSMUSP00000116354.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000155634.7Link to Ensembl Protein Viewer:ENSMUSP00000116354.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000155634Re-query CCDS DB by Protein ID:ENSMUSP00000116354
Original member Current member EBI ENSMUST00000129099.7 ENSMUSP00000122723.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000129099.7Link to Ensembl Protein Viewer:ENSMUSP00000122723.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000129099Re-query CCDS DB by Protein ID:ENSMUSP00000122723
Original member Current member NCBI NM_001012363.2 NP_001012363.2 Accepted alive Link to Nucleotide Sequence:NM_001012363.2Link to Protein Sequence:NP_001012363.2Re-query CCDS DB by Nucleotide ID:NM_001012363Re-query CCDS DB by Protein ID:NP_001012363Link to BLAST:NP_001012363.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012363.2 523 Q3T9X0-2 523 100% 0 0

Chromosomal Locations for CCDS 51484.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 38351083 38351337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38362843 38362970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38379918 38379993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38382043 38382144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38391714 38391824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38398702 38398889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38417175 38417307 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38436540 38436685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38440650 38440774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38453102 38453262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38477395 38477493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 38483317 38483364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1572 nt):
ATGAAGCTCAGTGAAAAGAACTCCGCAGAAACCAAGGAAAGCCAGCGGAAATGGTCCTTCTCGCTCGTCG
TGGCAGCTCTCGTGGGAGCCTTCGGGTCCTCCTTCCTCTACGGGTACAACCTCTCCGTGGTGAACGCGCC
CACGCCGTATATCAAGGCCTTTTACAATGGAACCTGGTACAGGAGGCATGGACAGCCCATTGACCCGGAT
ACCCTGACTCTGCTCTGGTCTGTGACTGTGTCCATATTTGCGATTGGTGGCCTGGTGGGAACGCTGATGG
TGAAGATGATTGGAAAGTTTCTTGGGAGGAAGTCCACATTGCTGGTCAACAATGGATTTGCCATTTCCGC
AGCGTTGCTGATGGCATGCTCACTCCGGGCAGGAACCTTTGAGATGCTCATTGTGGGACGGTTCATCATG
GGTGTGGATGGAGGCATTGCACTCAGCGCGCTCCCCATGTATCTCAACGAGATCTCACCCAAGGAGATCC
GGGGCTCTCTGGGCCAGGTGACTGCCATCTTCATCTGCATTGGCGTGTTTTCTGGACAGTTGCTGGGCCT
GCCGGAGCTGCTGGGAAGGGAGAGCACCTGGCCATACCTGTTCGGAGTGATCATTGTCCCTGCCTTGGTC
CAGCTGGCAAGCCTGCCATTTCTCCCTGAGAGCCCACGCTACCTTCTCTTTGAAAAGCACGATGAAGCAG
GAGCCATGAAAGCCTTCCAAACATTTCTGGGGAAAGCAGATGTCTCCCAAGAGCTGGAGGAGGCCCTGGC
CGAGAGCCGCGTGCAAAGGAACCTCCGCCTGGTGTCTGTGCTGGAGCTTCTGAGGGCACCCTTTGTCCGC
TGGCAGGTCATCACGGTCATTATCACCATGGCCAGCTACCAACTATGTGGACTCAATGCGATCTGGTTCT
ACACCAACAGCATCTTTGGGAAAGCTGGGATCCCTCAGGACAAGATCCCATACATCACCCTGAGCACGGG
AGGAATTGAAACACTGGCTGCTATCTTCTCTGGCTTGGTCATTGAGCGCTTAGGAAGGAGACCTCTCCTC
ATTGGTGGCTTCGGGCTGATGGCCCTCTTCTTTGGGACCCTCACCGCGACACTGACCCTGCAGGACCAAG
CTCCCTGGGTCCCTTACCTCAGCATTGTGTGCATCTTGGCCATCATTGCCTCGTTCTGCAGCGGTCCAGG
TGGGATCCCATTCATCCTGACCGGAGAGTTCTTCCAACAGTCAGAGCGACCGGCAGCCTTCATGATCGCA
GGCACAGTCAACTGGCTCTCAAACTTCGCCGTAGGGCTCCTTTTCCCTTTCATCCAGAAAAGCCTGGACT
CCTACTGCTTCCTCGTCTTCGCCACAATATGTATCGCAGGTGCTACCTACTTCTATTTTGTCCTCCCGGA
GACCAAGAACAGAACCCATGCAGAAATCAGCCAGGCATTTGCCAAGAGGAACAAGGCTCAGCCCCCAGAG
GTGAAGGCTGATTCAGCCATGACTGAGGAGAAGGCCAACAGCCAGACTGAGCCCGATTCATCCTCCACGC
TGGACAGCTATGGCCAAAACAAAATTGTCTAA

Translation (523 aa):
MKLSEKNSAETKESQRKWSFSLVVAALVGAFGSSFLYGYNLSVVNAPTPYIKAFYNGTWYRRHGQPIDPD
TLTLLWSVTVSIFAIGGLVGTLMVKMIGKFLGRKSTLLVNNGFAISAALLMACSLRAGTFEMLIVGRFIM
GVDGGIALSALPMYLNEISPKEIRGSLGQVTAIFICIGVFSGQLLGLPELLGRESTWPYLFGVIIVPALV
QLASLPFLPESPRYLLFEKHDEAGAMKAFQTFLGKADVSQELEEALAESRVQRNLRLVSVLELLRAPFVR
WQVITVIITMASYQLCGLNAIWFYTNSIFGKAGIPQDKIPYITLSTGGIETLAAIFSGLVIERLGRRPLL
IGGFGLMALFFGTLTATLTLQDQAPWVPYLSIVCILAIIASFCSGPGGIPFILTGEFFQQSERPAAFMIA
GTVNWLSNFAVGLLFPFIQKSLDSYCFLVFATICIAGATYFYFVLPETKNRTHAEISQAFAKRNKAQPPE
VKADSAMTEEKANSQTEPDSSSTLDSYGQNKIV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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