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Report for CCDS57304.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
57304.1 Public Mus musculus 4 Ncmap 23 108 98 CCDS HistoryNCBI Gene:230822Re-query CCDS DB by CCDS ID:57304.1Re-query CCDS DB by GeneID:230822See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 57304.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105860.8 ENSMUSP00000101486.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105860.8Link to Ensembl Protein Viewer:ENSMUSP00000101486.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000105860Re-query CCDS DB by Protein ID:ENSMUSP00000101486
Original member Current member NCBI NM_001243306.1 NP_001230235.1 Accepted alive Link to Nucleotide Sequence:NM_001243306.1Link to Protein Sequence:NP_001230235.1Re-query CCDS DB by Nucleotide ID:NM_001243306Re-query CCDS DB by Protein ID:NP_001230235Link to BLAST:NP_001230235.1

Chromosomal Locations for CCDS 57304.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135370569 135370710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135371877 135371961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135376991 135377073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135380122 135380168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (357 nt):
ATGGGAAAGGAAACCCTGTTTTCTGTGGCATCTTGTACTGGGAGCAGGGGCGAGATGACCACAGCCACCA
CTTTGGGGGACGCCGTCTTCTCGCTGAACATGACCAGGGGAGAGGACGCCCTGTATAAGAGCTCTGGAGC
CATCGTGGCTGCCATTGTGGTGGTTGTCATCATCATTGTCACCTTGGTGCTGATCCTGCTGAAGATGTAC
AACAGGAGAATGAGGACCAGGCGGGAGCTGGAGCCCAAGAGCCCAAAGCCACCTGTCCCTCCTGCCCTGG
ACCCCAGCAGCAATGGCAGCCAGCAGCCTGCTACTGTGACCTTCGACCCTGCCAATGTCCATGTGGAGAC
TCGGTGA

Translation (118 aa):
MGKETLFSVASCTGSRGEMTTATTLGDAVFSLNMTRGEDALYKSSGAIVAAIVVVVIIIVTLVLILLKMY
NRRMRTRRELEPKSPKPPVPPALDPSSNGSQQPATVTFDPANVHVETR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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