NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS17341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17341.1 Public Mus musculus 3 Setd7 23 108 98 CCDS HistoryNCBI Gene:73251Re-query CCDS DB by CCDS ID:17341.1Re-query CCDS DB by GeneID:73251See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037141.8 ENSMUSP00000043492.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037141.8Link to Ensembl Protein Viewer:ENSMUSP00000043492.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037141Re-query CCDS DB by Protein ID:ENSMUSP00000043492
Original member NCBI NM_080793.5 NP_542983.3 Updated not alive Link to Nucleotide Sequence:NM_080793.5Link to Protein Sequence:NP_542983.3Re-query CCDS DB by Nucleotide ID:NM_080793Re-query CCDS DB by Protein ID:NP_542983
Current member NCBI NM_080793.6 NP_542983.3 Accepted alive Link to Nucleotide Sequence:NM_080793.6Link to Protein Sequence:NP_542983.3Re-query CCDS DB by Nucleotide ID:NM_080793Re-query CCDS DB by Protein ID:NP_542983Link to BLAST:NP_542983.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542983.3 366 Q8VHL1 366 100% 0 0

Chromosomal Locations for CCDS 17341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51521307 51521487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51526845 51527002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51530071 51530188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51532975 51533056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51536466 51536655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51542632 51542833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51550235 51550364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51560518 51560557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGATAGCGACGATGAGGTGGTGGAGGAAGCCGTGGAAGGGCACCTGGACGATGACGGATTACCACACG
GG
TTCTGCACTGTCACCTACTCCTCCACGGACAGATTTGAGGGCAACTTTGTGCATGGAGAAAAGAATGG
G
CGTGGGAAATTCTTCTTCTTTGACGGCAGCACCCTGGAGGGATATTACGTGGACGATGCCCTGCAGGGC
CAG
GGCGTTTACACCTATGAGGATGGAGGTGTTCTCCAAGGCACCTATGTGGATGGAGAGCTGAATGGAC
CG
GCCCAGGAGTACGACTCTGACGGGAGGCTGATCTTCAAGGGACAGTACAAAGACAACAATCGACACGG
A
GTGTGTTGGATCCATTACCCGGATGGAGGCAGCCTCGTCGGGGAAGTCAATGAAGATGGAGAGATGACG
GGA
GAAAAGATCGCCTATGTGTACCCTGACCAGAGGACTGCGCTCTATGGGAAGTTCATTGACGGAGAGA
TG
CTCGAAGGGAAACTGGCCACCCTCATGGCCACCGAAGAAGGGAGGCCACACTTTGAAGTGACGTCGGG
A
AGTTCCGTGTACCACTTTGATAAATCGACTTCCTCCTGCATCTCCAGCGATGCTCTCCTTCCAGACCCT
TAT
GAGTCTGAGAGGGTTTATGTTGCCGACTCTCTCATCTCCAGTGCTGGAGAAGGGCTGTTTTCCAAGG
TA
GCAGTTGGACCTAATACTGTTATGTCGTTTTATAATGGAGTCCGAATTACACACCAAGAGGTTGACAG
C
AGGGATTGGGCCCTAAATGGGAACACTCTCTCCCTGGACGAGGAGACAGTCATTGATGTGCCCGAGCCC
TAC
AACCACGTGTCCAAGTACTGTGCCTCCTTGGGACACAAGGCCAATCACTCCTTCACTCCGAACTGCG
TC
TATGACCTGTTTGTCCACCCCCGTTTCGGGCCGATCAAGTGCATCCGCACCCTGCGAGCTGTGGAGGC
C
GAGGAAGAGCTGACCGTTGCCTACGGCTATGACCACAGCCCCCCGGGGAAGAGTGGGCCTGAAGCCCCC
GAG
TGGTATCAAGTGGAGCTGAAGGCCTTCCAGGCCACCCAGCAGAAGTGA


Translation (366 aa):
MDSDDEVVEEAVEGHLDDDGLPHGFCTVTYSSTDRFEGNFVHGEKNGRGKFFFFDGSTLEGYYVDDALQG
Q
GVYTYEDGGVLQGTYVDGELNGPAQEYDSDGRLIFKGQYKDNNRHGVCWIHYP
DGGSLVGEVNEDGEMT
G
EKIAYVYPDQRTALYGKFIDGEMLEGKLATLMATEEGRPHFEVTSG
SSVYHFDKSTSSCISSDALLPDP
Y
ESE
RVYVADSLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEP
Y
NHVSKYCASLGHKANHSFTPNCVYD
LFVHPRFGPIKCIRTLRAVEAEEELTVAYGYDHSPPGKSGPEAP
E
WYQVELKAFQATQQK




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser