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Report for CCDS50767.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50767.1 Public Mus musculus 2 Raly 23 108 98 CCDS HistoryNCBI Gene:19383Re-query CCDS DB by CCDS ID:50767.1Re-query CCDS DB by GeneID:19383See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50767.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000029120.13 ENSMUSP00000029120.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000029120.13Link to Ensembl Protein Viewer:ENSMUSP00000029120.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000029120Re-query CCDS DB by Protein ID:ENSMUSP00000029120
Original member Current member EBI ENSMUST00000116389.8 ENSMUSP00000112090.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000116389.8Link to Ensembl Protein Viewer:ENSMUSP00000112090.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000116389Re-query CCDS DB by Protein ID:ENSMUSP00000112090
Original member NCBI NM_001139513.1 NP_001132985.1 Updated not alive Link to Nucleotide Sequence:NM_001139513.1Link to Protein Sequence:NP_001132985.1Re-query CCDS DB by Nucleotide ID:NM_001139513Re-query CCDS DB by Protein ID:NP_001132985
Current member NCBI NM_001139513.2 NP_001132985.1 Accepted alive Link to Nucleotide Sequence:NM_001139513.2Link to Protein Sequence:NP_001132985.1Re-query CCDS DB by Nucleotide ID:NM_001139513Re-query CCDS DB by Protein ID:NP_001132985Link to BLAST:NP_001132985.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001132985.1 312 Q64012-1 312 100% 0 0

Chromosomal Locations for CCDS 50767.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 154857278 154857533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154859678 154859750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154859911 154859958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154861840 154862006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154863550 154863663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154863814 154864049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 154865908 154865952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (939 nt):
ATGTCCTTGAAGATTCAGACCAGCAATGTAACCAACAAGAATGACCCTAAGTCCATCAACTCTCGGGTCT
TCATCGGAAATCTAAACACAGCTGTGGTGAAGAAGTCAGATGTGGAGACCATCTTTTCCAAGTACGGCCG
AGTGGCTGGTTGCTCTGTGCACAAAGGCTATGCTTTTGTCCAGTATGCCAATGAGCGCCATGCCCGGGCA
GCTGTGCTGGGAGAGAATGGGCGGGTGCTGGCTGGACAGACCCTGGACATCAACATGGCTGGAGAGCCCA
AGCCTAATAGACCCAAGGGGCTAAAGAGAGCAGCAACTGCCATCTACAGTGGCTACAGCTTTGACTATGA
TTACTACCAAGACTACTTCTGTGCCAGGCTGTTTGATTATCGAGGCCGCCTTTCTCCAGTGCCTGTGCCC
AGGGCAGTTCCGGTGAAGCGACCCCGTGTTACAGTCCCTTTGGTTCGCCGTGTCAAAACTACGATACCTG
TCAAGCTCTTTGCCCGCTCCACAGCTGTCACTACTGGCTCAGCCAAAATCAAGTTAAAGAGCAGTGAGCT
ACAGACCATCAAAACAGAGCTGACACAGATCAAGTCCAACATCGATGCCCTGTTGGGTCGCTTGGAACAG
ATTGCTGAGGAACAGAAGGCCAACCCAGATGGCAAGAAGAAGGGTGACAGCAGCAGTGGTGGAGGAGGAG
GCAGCAGTGGTGGAGGCGGCAGTAGCAATGTTGGTGGTGGCAGCAGCGGCGGCAGCGGGAGCTGCAGCAG
CAGCAGCCGGCTACCAGCGCCCCAAGAAGACACGGCTTCTGAGGCAGGCACACCCCAAGGAGAAGTCCAA
ACTCGAGATGATGGTGATGAGGAGGGACTGCTAACACATAGCGAGGAGGAGCTGGAGCACAGCCAGGACA
CAGATGCAGAAGATGGAGCCTTGCAGTAA

Translation (312 aa):
MSLKIQTSNVTNKNDPKSINSRVFIGNLNTAVVKKSDVETIFSKYGRVAGCSVHKGYAFVQYANERHARA
AVLGENGRVLAGQTLDINMAGEPKPNRPKGLKRAATAIYSGYSFDYDYYQDYFCARLFDYRGRLSPVPVP
RAVPVKRPRVTVPLVRRVKTTIPVKLFARSTAVTTGSAKIKLKSSELQTIKTELTQIKSNIDALLGRLEQ
IAEEQKANPDGKKKGDSSSGGGGGSSGGGGSSNVGGGSSGGSGSCSSSSRLPAPQEDTASEAGTPQGEVQ
TRDDGDEEGLLTHSEEELEHSQDTDAEDGALQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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