NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS15658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15658.1 Public Mus musculus 2 Bend7 23 108 98 CCDS HistoryNCBI Gene:209645Re-query CCDS DB by CCDS ID:15658.1Re-query CCDS DB by GeneID:209645See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15658.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056914.6 ENSMUSP00000052458.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056914.6Link to Ensembl Protein Viewer:ENSMUSP00000052458.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056914Re-query CCDS DB by Protein ID:ENSMUSP00000052458
Original member Current member NCBI NM_178663.4 NP_848778.1 Accepted alive Link to Nucleotide Sequence:NM_178663.4Link to Protein Sequence:NP_848778.1Re-query CCDS DB by Nucleotide ID:NM_178663Re-query CCDS DB by Protein ID:NP_848778Link to BLAST:NP_848778.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848778.1 434 Q8BSV3-1 434 100% 0 0

Chromosomal Locations for CCDS 15658.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 4718232 4718292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4720481 4720564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4744219 4744521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4749536 4749658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4752720 4752991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4763078 4763303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4788456 4788575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4796530 4796583 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 4799954 4800015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1305 nt):
ATGGAGTTCTCGGAGAGGAAAAGAAGCAGGAAATCCCAGAGCTTCAAACTGGTGAGCCGAGATTATCACC
ATGAGGTGTATAAAATCTCAGAATTCAGCAATGATGTTAATGGGGAGACCAAAGAGACACAACCCATTTA
CTTAGGAGACGAAAGCATGGAAATTAAAAAACAAATTACGGGGATGAGAAGATTACTGAATGACAGCACT
GGAAGGATATATCAGCGTGTCGGCAAAGAAGGAGAAAAATTAAAACAAGAGCCGCAGGTTGTGGATTTAG
TCTGGCCTCAGCGGTCCAACTCTTCCACCGAGGCCTCACAGGGCCTCCACTCTAATTCACGTGGGGCGTG
GAATGAACTACCAACCCAAAGCGGGCAGTTCTCAGGGCAGTCTGGTCCACGCTCCAGAACCTTCCAGACT
CAGCCCCACATCTCTGCAAGTTCCAATGGAGAACTTCCAGGGGTGAATTCAATAGTCGGATCCAACTGCT
GTACTTGTAACTGCCAGTCAACCTTGCAGGCCATTCTCCAAGAGCTCAAGACCATGAGGAAATTAATGCA
GTTTCAAGCAGTTGGAACTCAAAACAGACAACAACCCCCAATTTCCCTTATGTGCTCCCAGCGAACCGCC
GTCTCACGCAAGAGAAATAAAAAGAAAAAAGTGCTTCCGAAGACTGTGCAACCTGTGACGGCTGTGGAAC
CAAAGCCCAGTCCCTTGGAAACTGAGAAGAAGCCAGCAGCCTCGGCCACAAGGCCACCAGGTCTCCAAGC
TGCAGAGCGCACCTCCACCGAGGAGAACCACGTCCTGGGATTTGGCATTGTTCTGGAATCGCCGTCCTCA
GATCCAGAAGTGCAACTTGCTGAAGGCTTCGATGTGTTTATGCCCAAATCTCAGCTGGACTCTATACTGT
CAAACTACACTCGCTCAGGAAGCCTTCTGTTTAGAAAACTGGTGTGTGCATTTTTTGACGACAAGACTTT
GGCTAACTCCTTACCCAACGGAAAGCGGAAAAGAGGGTTCAATGACAACCGGAAAGGACTAGACCAAAAC
ATTGTGGGTGCAATAAAAGTCTTTACAGAAAATTACTGTACTGCGAATCATGTGGATAAACTTCCTGGCC
CCAGAGACTGGGTGCAGATTCTGCAGGATCAGATTAAACTGGCCAGAAGAAGGTTGAAACGAGGCTCAGC
AGAGGTAGCTGACGGTGATGAAAGACTGGACCGCATCTCTCTACCCCCAACAGGTCATACATTTGTCATC
AAGAGAGAGACCCCAGAGGACCCAGAACCAGGTTCCGTGGCCTAG

Translation (434 aa):
MEFSERKRSRKSQSFKLVSRDYHHEVYKISEFSNDVNGETKETQPIYLGDESMEIKKQITGMRRLLNDST
GRIYQRVGKEGEKLKQEPQVVDLVWPQRSNSSTEASQGLHSNSRGAWNELPTQSGQFSGQSGPRSRTFQT
QPHISASSNGELPGVNSIVGSNCCTCNCQSTLQAILQELKTMRKLMQFQAVGTQNRQQPPISLMCSQRTA
VSRKRNKKKKVLPKTVQPVTAVEPKPSPLETEKKPAASATRPPGLQAAERTSTEENHVLGFGIVLESPSS
DPEVQLAEGFDVFMPKSQLDSILSNYTRSGSLLFRKLVCAFFDDKTLANSLPNGKRKRGFNDNRKGLDQN
IVGAIKVFTENYCTANHVDKLPGPRDWVQILQDQIKLARRRLKRGSAEVADGDERLDRISLPPTGHTFVI
KRETPEDPEPGSVA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH