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Report for CCDS89338.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89338.1 Public Mus musculus 19 Incenp 23 108 98 CCDS HistoryNCBI Gene:16319Re-query CCDS DB by CCDS ID:89338.1Re-query CCDS DB by GeneID:16319See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89338.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000237439.1 ENSMUSP00000157547.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000237439.1Link to Ensembl Protein Viewer:ENSMUSP00000157547.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000237439Re-query CCDS DB by Protein ID:ENSMUSP00000157547
Original member Current member NCBI NM_001369356.1 NP_001356285.1 Accepted alive Link to Nucleotide Sequence:NM_001369356.1Link to Protein Sequence:NP_001356285.1Re-query CCDS DB by Nucleotide ID:NM_001369356Re-query CCDS DB by Protein ID:NP_001356285Link to BLAST:NP_001356285.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001356285.1 880 Q9WU62-1 880 100% 0 0

Chromosomal Locations for CCDS 89338.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 9872677 9872873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9874220 9874370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9874816 9874923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9875098 9875176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9876590 9876816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9877677 9877796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9878128 9878248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9878319 9878428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9883192 9883203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9883699 9883833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9883905 9884019 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9884438 9884489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9885473 9885587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9885707 9885764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9886675 9886726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9893273 9894009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9894839 9894952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 9895321 9895460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2643 nt):
ATGGGGACCACAGCCCCAGGGCCTATTTGCCTTCTGGATCTATGTGACCAGAAACTCCTGGACTTTGTCT
GCAATGTGGACAACAAGGACTTCATGTGGCTCAAGGAGATTGAGGAGGAGGCTGAGCGCATGTTTATCAG
AGAATTCAGCAATGAGCCAGAGCTGATGCCCAAAACTCCTTCTCAGAAAAACCGTCGGAAGAAGAGGCGG
GTGTCTAACATTCAGGATGAAAACAGAGATCCCGTGAGGAAAAGGTTATCCCGCAGAAAGTCTCGGAGCA
GTCAGGTGGGTACCCGGCACCTCCGCAGCAAGCCCGTTACTATTGTTGAGGAGAATGGCTTCCCTGTGTT
GCAGCGGATAACCCGGGCCACAGCTGCAGCAGCGGCAGCAGCAGCGGCAGCGTCTGTGGCATCAGCTTCT
TCCTCTTCCACTGCTGGGTCTCCCACAGTGCTGACCAAGAAAGCAGTGGTGGAGATAAGCACTAGTGAAC
GACTGAGTGCAGAACTACAACTCACTAAGCTCAAAGGTAGCCTTCCTCCATCTCCAGTTTCCCAAGGCAC
CCTGACATCAGAGGAGGAACTAACACCCAAGAAATCAGAGGCTGGAAAGCTGGACTCTGTCACAGTGAAC
TCCCTCAAGGCTACCCCTCAGAGCCCCAAGAACCGAGGGGTTGGGGAAGGACGTTCTGTTTCCAAGCTCA
AGATTGCTCGGGCCTCCTGGGGGCTGCAGGACTCTCCTGGCTCTACAGACTCACCATGGCAAGAGCGGGT
GCTTTCTCCTATCCTGCTGAATAACATCTTGCCCACAACAGCCAAGAGCCCTCTTGGGAATATTCGGTCA
GTGCGGCGAAGCCTGATTTCCCAGGATTCCCAAGTGCCACTAGCCTCGAAGTATAATTTGGTGGCCAAAC
AAGAAAATGGCAGTCGCAGATCAAGCAGAAGGATTGCCAAGAAGGCTGGCAAAGAGCCAGAGGCCTCTGC
TCGAATCATTTGTCACAGTTACCTGGAGAGGCTCCTGAATGTTGAAGTGCCTCAGAATGTTGGCCTGGAG
CAGGAGCCTGTCGAGGTGGCCGAACCTGAGGAGGCAGAAGAGGAGCAAGAGGTCTCCAAGAACAGTGGGT
GTCCCTCCAAACCCCGCAGTGCCACCAAGATTGCGATTAGTACGCCCACCTCGAAGCCTGCGGCCGCTGG
TCAGACAACAACTGTTGAAGAGCAAGAAGCTGAGCTTGACCAAACAGATGGACACAGAGAACCACCCCAG
AGTGTCAGGAGGAAACGCAGTTACAAACAGGCAATAAGTGAACCGGATGAGGAGCAACTGGAAGATGAAG
AACTGCAGCCCTGCCAGAATAAGACCCCTTCCCCACCCTGTCCAGCCAACAAGGTGGTACGGCCCCTCCG
GACTTTCCTGCACACAGTGCAGAAGAACCAGATGCTCATGACCCCCACACTGGCCTCCCGCAGCAGTGTC
ATGAAGTCCTTTATTAAACGCAACACTCCGCTTCGTGTGGACCCTAAGTGCAGCTTTGTTGAGAAGGAGC
GCCAGCGCCTAGAGAGCCTGCGACGGAAGGAGGAGGCCGAGCAGCGGCGCAGACAGAAGGTAGAGGAAGA
CAAGCGGCGGCGACTGGAGGAGGTGAAGCTGAAGCGTGAAGAGCGCCTCCGCAAGGTGTTGCAGGCCCGT
GAGAGGGTGGAACAGATGAAGGAGGAAAAGAAGAAGCAGATTGAGCAGAAGTTTGCTCAGATTGATGAGA
AGACAGAAAAGGCTAAGGAGGAGCGTCTGGCAGAGAAGGCAAAGAAGAAGGCAACTGCCAAGAAGATGGA
AGAGGTAGAGGCACGAAGGAAGCAGGAGGAGGAGGCACGCAGGCTCAGGTGGCTCCAACAGGAGGAAGAG
GAGCGGCGGCATCAAGAAATGCTACAACGGAAGAAGGAGGAAGAACAGGAGCGCCGCAAAGCAGCTGAGG
CCAGGCGCCTGGCAGAACAGCGGGAGCAAGAGAGGCGAAGGGAGCAGGAGCGGCGGGAGCAGGAGCGGAG
GGAACAGGAGCGGAGGGAACAGGAACGGAAGGAGCAGGAGCGGCGGGAGCAGGAGCAGGAGCGTCTTCGG
GCCAAGAGGGAGATGCAGGAGAGAGAGAAAGCCCTGCGACTCCAAAAGGAACGACTTCAGAAGGAACTGG
AGGAGAAGAAGAGGAAGGAAGAGCAACAGCGCCTGGCTGAGCAGCAACTGCAGGAGGAGCAGGCAAAGAA
AGCTAAGGAGGTGGCAGCAGCCAGGAAAGTCCTGAACATGACTGTGGATGTGCAGTCTCCTGTTTGTACC
TCATATCAAATGACTCCACAAGGACCCAAATCCATCCCCAAGATCAGCGTAGACGATTATGGGATGGACC
TAAATAGTGATGACTCCACAGATGATGAGTCCCACCCCCGGAAACCCATCCCTTCCTGGGCCAAAGGCAC
CCAACTCAGCCAGGCCATTGTCCACCAGTACTACCACCCTCCAAACATTCTAGAGCTCTTCGGATCTATT
CTCCCACTGGACTTGGAGGACATCTTTAAGAAGAGGAAGACTCGCTACCACAAGCGCACTAGCTCTGCTG
TTTGGAACTCACCACCCCTGAAAGCCACCATGGTCCCCAGCAGTGGGGACTAG

Translation (880 aa):
MGTTAPGPICLLDLCDQKLLDFVCNVDNKDFMWLKEIEEEAERMFIREFSNEPELMPKTPSQKNRRKKRR
VSNIQDENRDPVRKRLSRRKSRSSQVGTRHLRSKPVTIVEENGFPVLQRITRATAAAAAAAAAASVASAS
SSSTAGSPTVLTKKAVVEISTSERLSAELQLTKLKGSLPPSPVSQGTLTSEEELTPKKSEAGKLDSVTVN
SLKATPQSPKNRGVGEGRSVSKLKIARASWGLQDSPGSTDSPWQERVLSPILLNNILPTTAKSPLGNIRS
VRRSLISQDSQVPLASKYNLVAKQENGSRRSSRRIAKKAGKEPEASARIICHSYLERLLNVEVPQNVGLE
QEPVEVAEPEEAEEEQEVSKNSGCPSKPRSATKIAISTPTSKPAAAGQTTTVEEQEAELDQTDGHREPPQ
SVRRKRSYKQAISEPDEEQLEDEELQPCQNKTPSPPCPANKVVRPLRTFLHTVQKNQMLMTPTLASRSSV
MKSFIKRNTPLRVDPKCSFVEKERQRLESLRRKEEAEQRRRQKVEEDKRRRLEEVKLKREERLRKVLQAR
ERVEQMKEEKKKQIEQKFAQIDEKTEKAKEERLAEKAKKKATAKKMEEVEARRKQEEEARRLRWLQQEEE
ERRHQEMLQRKKEEEQERRKAAEARRLAEQREQERRREQERREQERREQERREQERKEQERREQEQERLR
AKREMQEREKALRLQKERLQKELEEKKRKEEQQRLAEQQLQEEQAKKAKEVAAARKVLNMTVDVQSPVCT
SYQMTPQGPKSIPKISVDDYGMDLNSDDSTDDESHPRKPIPSWAKGTQLSQAIVHQYYHPPNILELFGSI
LPLDLEDIFKKRKTRYHKRTSSAVWNSPPLKATMVPSSGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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