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Report for CCDS88904.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
88904.1 Public Mus musculus 16 Masp1 23 108 98 CCDS HistoryNCBI Gene:17174Re-query CCDS DB by CCDS ID:88904.1Re-query CCDS DB by GeneID:17174See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 88904.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000229619.1 ENSMUSP00000155665.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000229619.1Link to Ensembl Protein Viewer:ENSMUSP00000155665.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000229619Re-query CCDS DB by Protein ID:ENSMUSP00000155665
Original member Current member NCBI NM_001359083.1 NP_001346012.1 Accepted alive Link to Nucleotide Sequence:NM_001359083.1Link to Protein Sequence:NP_001346012.1Re-query CCDS DB by Nucleotide ID:NM_001359083Re-query CCDS DB by Protein ID:NP_001346012Link to BLAST:NP_001346012.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346012.1 733 P98064-2 733 100% 0 0

Chromosomal Locations for CCDS 88904.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 23469847 23470730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23474874 23474948 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23476267 23476404 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23483395 23483473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23484351 23484469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23485602 23485749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23491922 23492118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23494622 23494753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23496080 23496257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23513832 23514078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 23520546 23520550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2202 nt):
ATGAGGTTCCTGTCTTTCTGGCGGCTCCTCCTCTACCACGCTCTGTGCCTCGCCCTGCCGGAGGTTTCAG
CCCATACCGTGGAGCTAAACGAAATGTTTGGTCAGATCCAGTCACCTGGCTATCCAGATTCCTATCCAAG
TGACTCTGAGGTGACATGGAATATTACTGTCCCGGAGGGGTTTCGAATCAAGCTTTACTTCATGCACTTC
AACTTGGAATCCTCCTATCTTTGTGAATACGACTATGTGAAGGTAGAAACAGAAGACCAGGTGCTGGCAA
CCTTTTGTGGCAGGGAGACCACCGATACTGAGCAGACCCCCGGCCAGGAAGTGGTTCTTTCGCCTGGCAC
CTTCATGTCTGTCACTTTCCGGTCAGATTTCTCCAATGAGGAACGATTCACAGGCTTCGACGCCCACTAC
ATGGCTGTAGATGTGGATGAGTGCAAGGAGAGGGAAGATGAAGAGCTGTCCTGTGACCACTACTGTCACA
ACTACATCGGTGGCTACTACTGCTCCTGCCGCTTTGGCTACATCCTCCACACAGACAACAGGACCTGCCG
AGTGGAATGCAGCGGCAATCTCTTTACCCAGAGGACAGGCACAATCACCAGCCCCGATTACCCCAACCCT
TATCCCAAGAGCTCAGAATGTTCCTATACCATTGACCTGGAGGAAGGCTTCATGGTCAGCCTGCAGTTTG
AGGACATTTTTGACATTGAAGACCATCCTGAGGTGCCCTGTCCCTATGACTACATTAAGATTAAAGCTGG
TTCAAAAGTATGGGGTCCCTTCTGTGGAGAGAAATCCCCAGAACCAATCAGCACCCAGACTCACAGTGTC
CAGATCCTATTCCGCAGCGACAACTCAGGAGAGAACCGAGGCTGGAGGCTCTCCTACAGAGCGGCAGGAA
ATGAGTGCCCAAAGCTACAGCCTCCTGTGTACGGGAAAATCGAGCCCTCGCAGGCCGTGTATTCCTTCAA
AGACCAAGTGCTCGTCAGCTGTGACACAGGCTACAAAGTGCTAAAGGATAACGAGGTGATGGACACATTC
CAAATTGAGTGTCTGAAGGACGGTGCATGGAGTAACAAGATCCCCACCTGTAAAATTGTAGACTGTGGAG
CTCCTGCAGGGCTGAAACATGGGCTAGTAACCTTCTCCACCAGAAACAACCTCACCACATACAAATCTGA
GATAAGGTACTCCTGCCAACAGCCCTATTACAAGATGCTTCACAATACCACAGGTGTATATACGTGTTCT
GCTCATGGGACCTGGACGAACGAAGTGCTCAAGAGAAGCCTGCCCACCTGCCTTCCAGTGTGTGGACAGC
CCTCCCGCGCCCTGCCAAACCTGGTGAAGAGAATCATCGGAGGTCGCAATGCTGAGCTTGGCCTCTTCCC
ATGGCAGGCCCTCATAGTGGTGGAAGACACATCGAGGGTACCAAACGACAAGTGGTTCGGGAGTGGGGCC
CTGCTCTCTGAGTCCTGGATACTCACAGCAGCCCATGTTCTGCGTTCCCAGCGCAGAGACAACACAGTCA
TACCTGTCTCGAAGGAACATGTCACCGTCTATCTGGGCCTTCATGATGTTCGGGACAAATCAGGAGCTGT
CAATAGCTCTGCTGCCCGAGTGATACTCCATCCAGACTTTAACATCCAGAACTACAACCATGACATCGCT
CTGGTACAGCTACAGAAGCCTGTGCCCTTGGGGGCCCATGTCATGCCCATCTGTCTACCAAGACCTGAGC
CTGAAGGTCCAGCCCCTCACATGTTGGGACTGGTGGCTGGCTGGGGCATCTCCAATCCTAATGTGACAGT
GGACGAGATCATCCTCAGTGGCACACGAACCTTATCAGATGTCCTACAGTATGTCAAATTACCCGTGGTG
TCACATGCTGAATGCAAAGCCAGCTATGAGTCTCGGTCGGGCAACTACAGTGTCACAGAGAACATGTTCT
GTGCTGGCTACTATGAGGGTGGCAAGGATACGTGTCTTGGGGATAGCGGTGGGGCCTTCGTCATCTTTGA
TGAGATGAGCCAGCACTGGGTAGCCCAAGGCCTGGTGTCCTGGGGAGGACCTGAAGAATGTGGTAGCAAG
CAAGTGTATGGAGTCTACACAAAGGTCTCCAACTATGTGGACTGGCTATGGGAGGAGATGAACTCCCCGA
GGGCTGTCAGGGACCTCCAGGTAGAACGGTGA

Translation (733 aa):
MRFLSFWRLLLYHALCLALPEVSAHTVELNEMFGQIQSPGYPDSYPSDSEVTWNITVPEGFRIKLYFMHF
NLESSYLCEYDYVKVETEDQVLATFCGRETTDTEQTPGQEVVLSPGTFMSVTFRSDFSNEERFTGFDAHY
MAVDVDECKEREDEELSCDHYCHNYIGGYYCSCRFGYILHTDNRTCRVECSGNLFTQRTGTITSPDYPNP
YPKSSECSYTIDLEEGFMVSLQFEDIFDIEDHPEVPCPYDYIKIKAGSKVWGPFCGEKSPEPISTQTHSV
QILFRSDNSGENRGWRLSYRAAGNECPKLQPPVYGKIEPSQAVYSFKDQVLVSCDTGYKVLKDNEVMDTF
QIECLKDGAWSNKIPTCKIVDCGAPAGLKHGLVTFSTRNNLTTYKSEIRYSCQQPYYKMLHNTTGVYTCS
AHGTWTNEVLKRSLPTCLPVCGQPSRALPNLVKRIIGGRNAELGLFPWQALIVVEDTSRVPNDKWFGSGA
LLSESWILTAAHVLRSQRRDNTVIPVSKEHVTVYLGLHDVRDKSGAVNSSAARVILHPDFNIQNYNHDIA
LVQLQKPVPLGAHVMPICLPRPEPEGPAPHMLGLVAGWGISNPNVTVDEIILSGTRTLSDVLQYVKLPVV
SHAECKASYESRSGNYSVTENMFCAGYYEGGKDTCLGDSGGAFVIFDEMSQHWVAQGLVSWGGPEECGSK
QVYGVYTKVSNYVDWLWEEMNSPRAVRDLQVER


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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