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Report for CCDS49743.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49743.1 Public Mus musculus 15 Zfp385a 23 108 98 CCDS HistoryNCBI Gene:29813Re-query CCDS DB by CCDS ID:49743.1Re-query CCDS DB by GeneID:29813See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49743.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000168828.2 ENSMUSP00000130176.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000168828.2Link to Ensembl Protein Viewer:ENSMUSP00000130176.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000168828Re-query CCDS DB by Protein ID:ENSMUSP00000130176
Original member NCBI NM_013866.2 NP_038894.2 Updated not alive Link to Nucleotide Sequence:NM_013866.2Link to Protein Sequence:NP_038894.2Re-query CCDS DB by Nucleotide ID:NM_013866Re-query CCDS DB by Protein ID:NP_038894
Current member NCBI NM_013866.3 NP_038894.2 Accepted alive Link to Nucleotide Sequence:NM_013866.3Link to Protein Sequence:NP_038894.2Re-query CCDS DB by Nucleotide ID:NM_013866Re-query CCDS DB by Protein ID:NP_038894Link to BLAST:NP_038894.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038894.2 386 Q8VD12-1 386 100% 0 0

Chromosomal Locations for CCDS 49743.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 15 (NC_000081.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 103314995 103315225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103315361 103315456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103315627 103315796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103315882 103316124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103317949 103318111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103320290 103320400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103333065 103333201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 103340047 103340056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1161 nt):
ATGATCCTCGGCAGCCTGAGCCGGGCAGGGCCCCTCCCTCTGCTCCGGCAGCCCCCCATCATGCAGCCAC
CGATGGACCTCAAGCAGATCCTGCCCTTCCCACTAGAGCCAGCCCCAACCCTGGGCCTCTTCAGCAACTA
CAGCACAATGGACCCTGTACAGAAAGCTGTGCTCTCCCACACTTTTGGAGGACCCTTGCTCAAGACCAAG
CGGCCAGTCATTTCCTGTAATGTCTGTCAGATCCGCTTCAATTCTCAGAGCCAGGCTGAGGCGCACTACA
AGGGTAATCGCCATGCCCGAAGAGTCAAAGGCATCGAAGCTGCCAAAACCCGAGGCAGGGAGCCTAGTGT
CCGGGAATCAGGAGATCCAGCTCCAGCAGGCAGCATCCCTCCGAGTGGGGATGGTGTAGCCCCTCGTCCA
GTTTCCATGGAGAATGGCCTGGGTCCAGCTCCAGGATCCCCAGAGAAACAGCCTGGCTCCCCATCCCCTC
CCAGTGTTCCAGAGTCGGGACAGGGTGTAACCAAGGGTGAAGGGGGAACTTCAGTCCCAGCTTCCCTGCC
TGGGGGTAGCAAGGAAGAGGAGGAGAAGGCTAAGCGTCTGCTCTACTGTGCACTGTGCAAGGTGGCTGTG
AACTCCCTGTCCCAGCTTGAGGCACATAACAAAGGTACTAAGCACAAGACAATTTTGGAGGCCCGAAGTG
GGCTGGGACCCATCAAAGCTTACCCTCGGTTGGGGCCTCCCACTCCTGGGGAACCAGAGGCTCCTGCCCA
GGACCGAACCTTCCACTGTGAGATCTGCAATGTCAAGGTCAATTCGGAGGTCCAGCTGAAACAGCACATC
TCCAGCAGGAGGCACCGAGATGGCGTGGCTGGGAAGCCCAACCCTCTACTGAGCCGGCACAAGAAGCCTA
GGGGCGCTGCAGAGCTGGCGGGCACGCTGACTTTCTCAAAGGAGCTGCCCAAGTCCCTGGCCGGTGGCCT
GCTCCCCAGCCCCCTAGCGGTGGCTGCGGTGATGGCCGCTGCAGCAGGATCTCCGCTGTCCCTGCGTCCA
GCTCCAGCTGCACCTCTTCTGCAGGGACCACCGATCACACACCCTCTACTCCACCCTGCCCCAGGACCCA
TCCGAACTGCGCACGGACCCATCCTCTTCTCCCCCTACTGA

Translation (386 aa):
MILGSLSRAGPLPLLRQPPIMQPPMDLKQILPFPLEPAPTLGLFSNYSTMDPVQKAVLSHTFGGPLLKTK
RPVISCNVCQIRFNSQSQAEAHYKGNRHARRVKGIEAAKTRGREPSVRESGDPAPAGSIPPSGDGVAPRP
VSMENGLGPAPGSPEKQPGSPSPPSVPESGQGVTKGEGGTSVPASLPGGSKEEEEKAKRLLYCALCKVAV
NSLSQLEAHNKGTKHKTILEARSGLGPIKAYPRLGPPTPGEPEAPAQDRTFHCEICNVKVNSEVQLKQHI
SSRRHRDGVAGKPNPLLSRHKKPRGAAELAGTLTFSKELPKSLAGGLLPSPLAVAAVMAAAAGSPLSLRP
APAAPLLQGPPITHPLLHPAPGPIRTAHGPILFSPY


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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