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Report for CCDS56873.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56873.1 Public Mus musculus 13 Dcdc2a 23 108 98 CCDS HistoryNCBI Gene:195208Re-query CCDS DB by CCDS ID:56873.1Re-query CCDS DB by GeneID:195208See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56873.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036932.14 ENSMUSP00000047641.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036932.14Link to Ensembl Protein Viewer:ENSMUSP00000047641.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000036932Re-query CCDS DB by Protein ID:ENSMUSP00000047641
Original member Current member NCBI NM_001195617.1 NP_001182546.1 Accepted alive Link to Nucleotide Sequence:NM_001195617.1Link to Protein Sequence:NP_001182546.1Re-query CCDS DB by Nucleotide ID:NM_001195617Re-query CCDS DB by Protein ID:NP_001182546Link to BLAST:NP_001182546.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001182546.1 368 Q5DU00-2 368 100% 0 0

Chromosomal Locations for CCDS 56873.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 13 (NC_000079.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 25056271 25056563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25061235 25061289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25102333 25102409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25102521 25102652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25107591 25107737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25110067 25110121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25119247 25119406 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25120365 25120552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGAACGGTCCCAGCTCCAGGTCCAGCCACCTGTCGCAGCCGGTGGTGAAGAGTGTGCTGGTGTACCGCA
ATGGGGACCCCTTTTTCGCCGGGCGGCGTGTCGTCATTCACGAGAAGAAGGTGTCCAGCTTCGATGTCTT
CCTCAAAGAAGTGACTGGCGGTGTGCAGGCGCCTTTTGGGGCGGTTAGGAACATCTACACCCCGAGGACG
GGCCACCGCATCCGAAAACTGGACCAGATAGAGAGCGGGGGCAACTATGTGGCTGGGGGCCCGGAAGCGT
TCAAGAAACTCAATTACTTGGACATAGGCGAAATCAAGAAAAGACCAATGGAAGCTGTGAATACCGAGGT
GAAACCTGTCATTCACAGCAGGATCAACGTGTCCGCCCGCTTCAGGAAGTCGCTGCACGAGCCCTGCACC
ATTTTCTTGATTGCAAATGGAGACCTCATAAGCCCGGCTTCTCGCCTCCTCATCCCTAAAAAAGCTTTAA
ATCAGTGGGATCATGTACTACAAATGGTCACAGAAAAGATAACTCTCCGGAGTGGGGCTGTCCACAGGCT
ATATACGTTAGAAGGAAAGCTGGTTGAGAGTGGAGCAGAACTGGAGAATGGGCAGTTCTATGTGGCCGTC
GGCAGAGATAAGTTTAAGAGACTACCGTACAGTGAGTTACTTTTTGACAAGTCAGCAATGAGAAGGCCTT
ACGGTCAGAAAGCGTCTTCACTACCTCCCATGGTTGGATCCAGGAAGTCTAAAGGGAGCGGAAATTATCG
GCAATCCAAGTCAACCATCGGGTCTAGTGATAACTCATCTCCTCAGCCTCTGAAAAGGAAAGGGAAGAAA
GACTCAAACTCAGAAAAACCCACGAAAGTGAAACAGAGTGTGAAGTCGAAGACTTCCCACCAAGCAATCC
CAGACAATGGATGGCTCATAAAAGTGGAGAGAGATACTTGCCTCAGGCCACAGCTGGATGGAAACAGAAA
TAGAGTGACTGCTTTGCCTCCCTACCCATGGTCCATCCACACAAGACATATGTGGGATGCTCCGGGTGAA
GACAGATGGAAAAAGGTCACCAATAAAGCCCAGCCGACGTATGGACACTCCATGTGA

Translation (368 aa):
MNGPSSRSSHLSQPVVKSVLVYRNGDPFFAGRRVVIHEKKVSSFDVFLKEVTGGVQAPFGAVRNIYTPRT
GHRIRKLDQIESGGNYVAGGPEAFKKLNYLDIGEIKKRPMEAVNTEVKPVIHSRINVSARFRKSLHEPCT
IFLIANGDLISPASRLLIPKKALNQWDHVLQMVTEKITLRSGAVHRLYTLEGKLVESGAELENGQFYVAV
GRDKFKRLPYSELLFDKSAMRRPYGQKASSLPPMVGSRKSKGSGNYRQSKSTIGSSDNSSPQPLKRKGKK
DSNSEKPTKVKQSVKSKTSHQAIPDNGWLIKVERDTCLRPQLDGNRNRVTALPPYPWSIHTRHMWDAPGE
DRWKKVTNKAQPTYGHSM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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