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Report for CCDS25702.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
25702.1 Public Mus musculus 11 Cant1 23 108 98 CCDS HistoryNCBI Gene:76025Re-query CCDS DB by CCDS ID:25702.1Re-query CCDS DB by GeneID:76025See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 25702.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017620.9 ENSMUSP00000017620.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017620.9Link to Ensembl Protein Viewer:ENSMUSP00000017620.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000017620Re-query CCDS DB by Protein ID:ENSMUSP00000017620
Original member Current member EBI ENSMUST00000092378.9 ENSMUSP00000090032.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000092378.9Link to Ensembl Protein Viewer:ENSMUSP00000090032.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000092378Re-query CCDS DB by Protein ID:ENSMUSP00000090032
Original member Current member EBI ENSMUST00000106287.7 ENSMUSP00000101894.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106287.7Link to Ensembl Protein Viewer:ENSMUSP00000101894.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106287Re-query CCDS DB by Protein ID:ENSMUSP00000101894
Original member Current member EBI ENSMUST00000106288.7 ENSMUSP00000101895.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106288.7Link to Ensembl Protein Viewer:ENSMUSP00000101895.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000106288Re-query CCDS DB by Protein ID:ENSMUSP00000101895
Original member Current member EBI ENSMUST00000164927.1 ENSMUSP00000126919.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164927.1Link to Ensembl Protein Viewer:ENSMUSP00000126919.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164927Re-query CCDS DB by Protein ID:ENSMUSP00000126919
Original member Current member NCBI NM_001025617.2 NP_001020788.1 Accepted alive Link to Nucleotide Sequence:NM_001025617.2Link to Protein Sequence:NP_001020788.1Re-query CCDS DB by Nucleotide ID:NM_001025617Re-query CCDS DB by Protein ID:NP_001020788Link to BLAST:NP_001020788.1
Original member Current member NCBI NM_001025618.2 NP_001020789.1 Accepted alive Link to Nucleotide Sequence:NM_001025618.2Link to Protein Sequence:NP_001020789.1Re-query CCDS DB by Nucleotide ID:NM_001025618Re-query CCDS DB by Protein ID:NP_001020789Link to BLAST:NP_001020789.1
Original member Current member NCBI NM_001267591.1 NP_001254520.1 Accepted alive Link to Nucleotide Sequence:NM_001267591.1Link to Protein Sequence:NP_001254520.1Re-query CCDS DB by Nucleotide ID:NM_001267591Re-query CCDS DB by Protein ID:NP_001254520Link to BLAST:NP_001254520.1
Original member Current member NCBI NM_029502.3 NP_083778.2 Accepted alive Link to Nucleotide Sequence:NM_029502.3Link to Protein Sequence:NP_083778.2Re-query CCDS DB by Nucleotide ID:NM_029502Re-query CCDS DB by Protein ID:NP_083778Link to BLAST:NP_083778.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020788.1 403 Q8VCF1-1 403 100% 0 0
NP_001020789.1 403 Q8VCF1-1 403 100% 0 0
NP_001254520.1 403 Q8VCF1-1 403 100% 0 0
NP_083778.2 403 Q8VCF1-1 403 100% 0 0

Chromosomal Locations for CCDS 25702.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 11 (NC_000077.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 118407724 118408094 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118408681 118408884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 118410853 118411489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1212 nt):
ATGCCCATCCAGCCCTTTGACCAGCGGGAATGGAATGAGCCTATGCACTCCCTCCGGATCAGTGTAGGGG
GCCTTCCTGTGCTGGCATCCATGACCAAGGCCACGGACCCTCGCTTCCGCCCCCGCTGGCGGGTGATCCT
CACGTCCTTTGTGGGTGCTGCCCTCCTCTGGCTGCTGTACTCCCACCATCAGGGCCCAGTGCCAGGCAGG
CCCCCCACCCACAATGCGCACAATTGGAGGCTCAGCCAGCAGCGCATCTCTCATTACAACGACACCTACC
CCCTCTCCCCCCCACAGAGGACTCCAGGTGGGATTCGGTACCGAATCGCAGTCATTGCTGACTTGGACAC
GGGGTCCAGGGCCCAGGAAGAAAACACTTGGTTTAGCTACCTTAAGAAAGGCTACCTGACCCTGTCGGAC
AGCGGGGACAGGGTCAGCGTGGAGTGGGATAAAGACCACGGGGTCCTAGAGTCCCACCTGGCAGAAAAGG
GGCGGGGCATGGAGCTCTCAGACCTGATTGTCTTCAATGGGAAACTCTACTCCGTGGATGACCGCACAGG
GGTCATCTACCAGATCGAAGGCACCAAAGCAGTGCCCTGGGTGATCCTTTCTGATGGCGATGGAACTGTG
GAGAAGGGTTTCAAAGCTGAATGGCTTGCTGTGAAGGACGAACACCTGTATGTGGGCGGCCTGGGCAAGG
AGTGGACCACCACGACAGGGGAGGTGATGAACGAGAACCCTGAGTGGGTGAAGGTGGTAGGCCACAGGGG
CAGTGTGGACCACGAGAACTGGGTGTCCAGCTACAACGCCCTGAGAGCAGCCGCCGGGATCCGACCACCA
GGCTACCTCATTCACGAGTCCGCCTGCTGGAGCGACACACTGCAGCGCTGGTTCTTCCTGCCTCGTCGGG
CTAGCCACGAACGCTACAGCGAGAAGGACGATGAACGCAAGGGCAGCAACCTCCTGCTGAGCGCAGCCCA
GGACTTCAGGGACATCTCTGTGAGGCAAGTGGGGACTCTGATCCCCACCCACGGCTTCTCATCCTTCAAA
TTCATCCCCAACACGGATGACCAGATCATCGTGGCTCTCAAGTCGGAAGAGGACAATGGCAGAATCGCCA
CCTATGTCATGGCCTTCACGCTGGACGGCCGCTTCCTGCTTCCAGAGACCAAGATCGGCACTGTGAAGTA
CGAAGGAATAGAGTTCATCTAG

Translation (403 aa):
MPIQPFDQREWNEPMHSLRISVGGLPVLASMTKATDPRFRPRWRVILTSFVGAALLWLLYSHHQGPVPGR
PPTHNAHNWRLSQQRISHYNDTYPLSPPQRTPGGIRYRIAVIADLDTGSRAQEENTWFSYLKKGYLTLSD
SGDRVSVEWDKDHGVLESHLAEKGRGMELSDLIVFNGKLYSVDDRTGVIYQIEGTKAVPWVILSDGDGTV
EKGFKAEWLAVKDEHLYVGGLGKEWTTTTGEVMNENPEWVKVVGHRGSVDHENWVSSYNALRAAAGIRPP
GYLIHESACWSDTLQRWFFLPRRASHERYSEKDDERKGSNLLLSAAQDFRDISVRQVGTLIPTHGFSSFK
FIPNTDDQIIVALKSEEDNGRIATYVMAFTLDGRFLLPETKIGTVKYEGIEFI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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