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Report for CCDS15642.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15642.1 Public Mus musculus 1 Cr2 23 108 98 CCDS HistoryNCBI Gene:12902Re-query CCDS DB by CCDS ID:15642.1Re-query CCDS DB by GeneID:12902See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 15642.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082321.8 ENSMUSP00000080938.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082321.8Link to Ensembl Protein Viewer:ENSMUSP00000080938.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000082321Re-query CCDS DB by Protein ID:ENSMUSP00000080938
Original member Current member NCBI NM_007758.3 NP_031784.1 Accepted alive Link to Nucleotide Sequence:NM_007758.3Link to Protein Sequence:NP_031784.1Re-query CCDS DB by Nucleotide ID:NM_007758Re-query CCDS DB by Protein ID:NP_031784Link to BLAST:NP_031784.1

Chromosomal Locations for CCDS 15642.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 195141190 195141283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195149972 195150044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195150923 195150946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195151572 195151757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195154132 195154317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195155125 195155517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195155884 195155966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195156280 195156358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195157137 195157544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195158060 195158136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195158412 195158502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195158578 195158754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195159416 195159823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195160270 195160352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195160596 195160695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195160779 195160967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195163198 195163587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 195176553 195176610 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3099 nt):
ATGGGATCCTTGGGTTCGCTCTGGGTTTTCTTCACTCTCATCACTCCAGGAGTTCTTGAGATTTCTTGTG
ACCCTCCTCCTGAAGTCAAAAATGCTCGGAAACCCTATTATTCTCTTCCCATAGTTCCTGGAACTGTTCT
GAGGTACACTTGTTCACCTAGCTACCGCCTCATTGGAGAAAAGGCTATCTTTTGTATAAGTGAAAATCAA
GTGCATGCCACCTGGGATAAAGCTCCTCCTATATGTGAATCTGTGAATAAAACCATTTCTTGCTCAGATC
CCATAGTACCAGGGGGATTCATGAATAAAGGATCTAAGGCACCATTCAGACATGGTGATTCTGTGACATT
TACCTGTAAAGCCAACTTCACCATGAAAGGAAGCAAAACTGTCTGGTGCCAGGCAAATGAAATGTGGGGA
CCAACAGCTCTGCCAGTCTGTGAGAGTGATTTCCCTCTGGAGTGCCCATCACTTCCAACGATTCATAATG
GACACCACACAGGACAGCATGTTGACCAGTTTGTTGCGGGGTTGTCTGTGACATACAGTTGTGAACCTGG
CTATTTGCTCACTGGAAAAAAGACAATTAAGTGCTTATCTTCAGGAGACTGGGATGGTGTCATCCCGACA
TGCAAAGAGGCCCAGTGTGAACATCCAGGAAAGTTTCCCAATGGGCAGGTAAAGGAACCTCTGAGCCTTC
AGGTTGGCACAACTGTGTACTTCTCCTGTAATGAAGGGTACCAATTACAAGGACAACCCTCTAGTCAGTG
TGTAATTGTTGAACAGAAAGCCATCTGGACTAAGAAGCCAGTATGTAAAGAAATTCTCTGCCCACCACCT
CCACCTGTTCGTAATGGAAGTCATACAGGCAGCTTTTCAGAAAATGTACCATATGGAAGCACAGTTACCT
ACACCTGTGACCCAAGCCCAGAGAAAGGCGTGAGCTTCACTCTTATTGGAGAGAAGACTATCAATTGTAC
TACTGGTAGTCAGAAGACTGGGATCTGGAGTGGCCCTGCTCCATATTGTGTACTTTCAACTTCTGCAGTT
CTGTGTTTACAACCGAAGATCAAAAGAGGGCAAATATTATCTATTTTGAAAGATAGTTATTCATATAATG
ACACTGTGGCATTTTCTTGTGAACCTGGCTTCACCTTGAAGGGCAACAGGAGCATTCGATGCAATGCTCA
TGGCACATGGGAGCCACCGGTACCAGTGTGTGAAAAAGGATGTCAGGCTCCTCCTAAAATTATCAATGGG
CAAAAAGAAGATAGTTACTTGCTCAACTTTGACCCTGGTACATCCATAAGATATAGCTGTGACCCTGGCT
ATTTACTGGTGGGAGAGGACACTATACATTGCACCCCTGAGGGGAAGTGGACACCCATTACTCCCCAGTG
CACAGTTGCAGAGTGTAAGCCAGTAGGACCACATCTCTTTAAGAGGCCTCAGAATCAGTTTATTAGGACA
GCTGTTAATTCTTCTTGTGATGAAGGGTTCCAGTTAAGTGAGAGTGCTTATCAACTGTGTCAAGGTACAA
TTCCTTGGTTTATAGAAATCCGTCTTTGTAAAGAAATCACCTGCCCACCACCTCCTGTTATACACAACGG
GACACATACATGGAGTTCCTCAGAAGATGTCCCATATGGAACTGTGGTCACATACATGTGCTATCCTGGG
CCAGAGGAAGGCGTAAAATTCAAACTCATCGGGGAGCAAACCATCCACTGTACAAGTGACAGCAGAGGAA
GAGGCTCCTGGAGTAGCCCTGCTCCTCTCTGTAAACTTTCCCTCCCAGCTGTCCAGTGCACAGACGTTCA
TGTTGAAAATGGAGTCAAGCTCACTGACAATAAAGCCCCATATTTCTACAATGATAGTGTGATGTTCAAG
TGTGATGATGGATATATTTTGAGTGGAAGCAGTCAGATCCGGTGTAAAGCCAATAATACCTGGGATCCTG
AAAAACCACTTTGTAAAAAAGAAGGATGTGAGCCTATGAGAGTACATGGCCTTCCAGATGATTCACATAT
AAAACTAGTGAAAAGAACCTGTCAAAATGGGTACCAGTTGACTGGATATACTTATGAGAAGTGTCAAAAT
GCTGAGAATGGGACTTGGTTTAAAAAGATTGAAGTTTGTACAGTTATTCTCTGTCAACCTCCACCAAAAA
TTGCAAATGGTGGTCACACAGGCATGATGGCAAAGCACTTCCTATATGGAAATGAAGTTTCTTATGAATG
TGATGAAGGGTTCTATCTTTTGGGAGAGAAAAGTTTGCAGTGCGTAAATGATTCTAAAGGTCATGGCTCT
TGGAGTGGACCTCCACCACAATGCTTACAATCTTCTCCTCTAACTCATTGCCCCGATCCAGAAGTCAAAC
ATGGTTACAAACTCAATAAAACTCATTCTGCATTTTCTCATAATGACATAGTACATTTTGTCTGCAATCA
AGGCTTCATCATGAACGGCAGCCACTTGATAAGGTGTCATACTAATAACACATGGTTACCAGGTGTACCA
ACTTGTATCAGAAAGGCTTCTTTAGGGTGTCAGTCTCCATCCACAATCCCCAATGGGAATCATACTGGTG
GGAGTATAGCTCGATTTCCCCCTGGAATGTCAGTCATGTACAGTTGCTACCAAGGCTTCCTTATGGCTGG
AGAGGCACGTCTTATCTGTACTCATGAGGGTACCTGGAGTCAACCTCCCCCTTTTTGCAAAGAGGTAAAC
TGTAGCTTCCCTGAAGATACAAATGGAATCCAGAAGGGATTTCAACCTGGGAAAACCTATCGATTTGGGG
CTACTGTGACTCTGGAATGTGAGGATGGGTATACCTTGGAGGGAAGTCCCCAGAGCCAGTGCCAGGATGA
CAGCCAATGGAACCCTCCCTTGGCTCTTTGCAAATACCGGTCAACTATTCCTCTTATTTGTGGTATTTCT
GTGGGCTCAGCACTTATCATTTTGATGAGTGTCGGCTTCTGTATGATATTAAAACACAGAGAAAGCAATT
ATTATACAAAGACAAGACCCAAAGAAGGAGCTCTTCATTTAGAAACACGAGAAGTATATTCTATTGATCC
ATATAACCCAGCAAGCTGA

Translation (1032 aa):
MGSLGSLWVFFTLITPGVLEISCDPPPEVKNARKPYYSLPIVPGTVLRYTCSPSYRLIGEKAIFCISENQ
VHATWDKAPPICESVNKTISCSDPIVPGGFMNKGSKAPFRHGDSVTFTCKANFTMKGSKTVWCQANEMWG
PTALPVCESDFPLECPSLPTIHNGHHTGQHVDQFVAGLSVTYSCEPGYLLTGKKTIKCLSSGDWDGVIPT
CKEAQCEHPGKFPNGQVKEPLSLQVGTTVYFSCNEGYQLQGQPSSQCVIVEQKAIWTKKPVCKEILCPPP
PPVRNGSHTGSFSENVPYGSTVTYTCDPSPEKGVSFTLIGEKTINCTTGSQKTGIWSGPAPYCVLSTSAV
LCLQPKIKRGQILSILKDSYSYNDTVAFSCEPGFTLKGNRSIRCNAHGTWEPPVPVCEKGCQAPPKIING
QKEDSYLLNFDPGTSIRYSCDPGYLLVGEDTIHCTPEGKWTPITPQCTVAECKPVGPHLFKRPQNQFIRT
AVNSSCDEGFQLSESAYQLCQGTIPWFIEIRLCKEITCPPPPVIHNGTHTWSSSEDVPYGTVVTYMCYPG
PEEGVKFKLIGEQTIHCTSDSRGRGSWSSPAPLCKLSLPAVQCTDVHVENGVKLTDNKAPYFYNDSVMFK
CDDGYILSGSSQIRCKANNTWDPEKPLCKKEGCEPMRVHGLPDDSHIKLVKRTCQNGYQLTGYTYEKCQN
AENGTWFKKIEVCTVILCQPPPKIANGGHTGMMAKHFLYGNEVSYECDEGFYLLGEKSLQCVNDSKGHGS
WSGPPPQCLQSSPLTHCPDPEVKHGYKLNKTHSAFSHNDIVHFVCNQGFIMNGSHLIRCHTNNTWLPGVP
TCIRKASLGCQSPSTIPNGNHTGGSIARFPPGMSVMYSCYQGFLMAGEARLICTHEGTWSQPPPFCKEVN
CSFPEDTNGIQKGFQPGKTYRFGATVTLECEDGYTLEGSPQSQCQDDSQWNPPLALCKYRSTIPLICGIS
VGSALIILMSVGFCMILKHRESNYYTKTRPKEGALHLETREVYSIDPYNPAS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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