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Report for CCDS17341.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17341.1 Public Mus musculus 3 Setd7 23 108 98 CCDS HistoryNCBI Gene:73251Re-query CCDS DB by CCDS ID:17341.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17341.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037141.8 ENSMUSP00000043492.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037141.8Link to Ensembl Protein Viewer:ENSMUSP00000043492.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000037141Re-query CCDS DB by Protein ID:ENSMUSP00000043492
Original member NCBI NM_080793.5 NP_542983.3 Updated not alive Link to Nucleotide Sequence:NM_080793.5Link to Protein Sequence:NP_542983.3Re-query CCDS DB by Nucleotide ID:NM_080793Re-query CCDS DB by Protein ID:NP_542983
Current member NCBI NM_080793.6 NP_542983.3 Accepted alive Link to Nucleotide Sequence:NM_080793.6Link to Protein Sequence:NP_542983.3Re-query CCDS DB by Nucleotide ID:NM_080793Re-query CCDS DB by Protein ID:NP_542983Link to BLAST:NP_542983.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542983.3 366 Q8VHL1 366 100% 0 0

Chromosomal Locations for CCDS 17341.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 51521307 51521487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51526845 51527002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51530071 51530188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51532975 51533056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51536466 51536655 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51542632 51542833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51550235 51550364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 51560518 51560557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1101 nt):
ATGGATAGCGACGATGAGGTGGTGGAGGAAGCCGTGGAAGGGCACCTGGACGATGACGGATTACCACACG
GGTTCTGCACTGTCACCTACTCCTCCACGGACAGATTTGAGGGCAACTTTGTGCATGGAGAAAAGAATGG
GCGTGGGAAATTCTTCTTCTTTGACGGCAGCACCCTGGAGGGATATTACGTGGACGATGCCCTGCAGGGC
CAGGGCGTTTACACCTATGAGGATGGAGGTGTTCTCCAAGGCACCTATGTGGATGGAGAGCTGAATGGAC
CGGCCCAGGAGTACGACTCTGACGGGAGGCTGATCTTCAAGGGACAGTACAAAGACAACAATCGACACGG
AGTGTGTTGGATCCATTACCCGGATGGAGGCAGCCTCGTCGGGGAAGTCAATGAAGATGGAGAGATGACG
GGAGAAAAGATCGCCTATGTGTACCCTGACCAGAGGACTGCGCTCTATGGGAAGTTCATTGACGGAGAGA
TGCTCGAAGGGAAACTGGCCACCCTCATGGCCACCGAAGAAGGGAGGCCACACTTTGAAGTGACGTCGGG
AAGTTCCGTGTACCACTTTGATAAATCGACTTCCTCCTGCATCTCCAGCGATGCTCTCCTTCCAGACCCT
TATGAGTCTGAGAGGGTTTATGTTGCCGACTCTCTCATCTCCAGTGCTGGAGAAGGGCTGTTTTCCAAGG
TAGCAGTTGGACCTAATACTGTTATGTCGTTTTATAATGGAGTCCGAATTACACACCAAGAGGTTGACAG
CAGGGATTGGGCCCTAAATGGGAACACTCTCTCCCTGGACGAGGAGACAGTCATTGATGTGCCCGAGCCC
TACAACCACGTGTCCAAGTACTGTGCCTCCTTGGGACACAAGGCCAATCACTCCTTCACTCCGAACTGCG
TCTATGACCTGTTTGTCCACCCCCGTTTCGGGCCGATCAAGTGCATCCGCACCCTGCGAGCTGTGGAGGC
CGAGGAAGAGCTGACCGTTGCCTACGGCTATGACCACAGCCCCCCGGGGAAGAGTGGGCCTGAAGCCCCC
GAGTGGTATCAAGTGGAGCTGAAGGCCTTCCAGGCCACCCAGCAGAAGTGA

Translation (366 aa):
MDSDDEVVEEAVEGHLDDDGLPHGFCTVTYSSTDRFEGNFVHGEKNGRGKFFFFDGSTLEGYYVDDALQG
QGVYTYEDGGVLQGTYVDGELNGPAQEYDSDGRLIFKGQYKDNNRHGVCWIHYPDGGSLVGEVNEDGEMT
GEKIAYVYPDQRTALYGKFIDGEMLEGKLATLMATEEGRPHFEVTSGSSVYHFDKSTSSCISSDALLPDP
YESERVYVADSLISSAGEGLFSKVAVGPNTVMSFYNGVRITHQEVDSRDWALNGNTLSLDEETVIDVPEP
YNHVSKYCASLGHKANHSFTPNCVYDLFVHPRFGPIKCIRTLRAVEAEEELTVAYGYDHSPPGKSGPEAP
EWYQVELKAFQATQQK


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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