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Report for CCDS84786.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
84786.1 Public Mus musculus 4 Lrrc41 23 108 98 CCDS HistoryNCBI Gene:230654Re-query CCDS DB by CCDS ID:84786.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 84786.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030471.8 ENSMUSP00000030471.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030471.8Link to Ensembl Protein Viewer:ENSMUSP00000030471.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000030471Re-query CCDS DB by Protein ID:ENSMUSP00000030471
Original member Current member NCBI NM_153521.2 NP_705741.3 Accepted alive Link to Nucleotide Sequence:NM_153521.2Link to Protein Sequence:NP_705741.3Re-query CCDS DB by Nucleotide ID:NM_153521Re-query CCDS DB by Protein ID:NP_705741Link to BLAST:NP_705741.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_705741.3 807 Q8K1C9 807 100% 0 0

Chromosomal Locations for CCDS 84786.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 116075409 116075607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116079389 116079475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116080549 116080619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116088447 116089569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116092872 116093132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116094877 116095041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116095133 116095231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116095792 116095914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116096143 116096218 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 116096323 116096542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2424 nt):
ATGGCGGCGCCCGAGGCCTGGCGCGCCCGGAGTTGCTGGTTCTGTGAGGTAGCGGCAGCAACGACCATGG
AGGCCACGTCCCGGGAGGCGGCGCCAGCGAAGAGCTCGGCCTCGGGCCCCAGCGCTCCCCCCGCCCTGTT
CGAGCTGTGCGGGCGGGCAGTGAGCGCCCATATGGGGGTTCTGGAGAGCGGGGTGTGGGCCCTCCCAGGC
CCAATACTTCAAAGCATCTTACCTCTGCTCAATATATATTACTTGGAGAGGATTGAGGAAACTGCTCTCA
AAAAAGGTCTCTCTACTCAAGCCATCTGGCGCCGACTCTGGGATGAACTGATGAAGACAAGGCCTTCCAG
TTTGGAGAGTGTGACTTGCTGGCGAGCCAAGTTTATGGAGGCCTTTTTTTCCCATGTTCTACGTGGAACC
ATTGATGTGTCTTCTGATAAACGTCTTTGTGATCAGCGCTTCTCACCTCTCCTGCACAGCTCCCGTCATG
TCCGACAGCTAACCATCTGCAACATGCTGCAGGGAGCAACTGAGCTAGTGGCAGAGCCCAACCGTAGGGT
TCTAGAGACCCTGGCCAGTTCTCTGCATACCCTCAAGTTCCGCCACCTGCTGTTCTCTGATGTGGCTGCT
CAGCAGTCACTTCGACAGCTGCTGCATCAGCTCATCCACCATGGGGCTGTTAGCCAAGTGTCGCTGTACT
CCTGGCCTGTGCCCGAGTCAGCCCTTTTCATCCTTATTCTTACCATGAGTGCTGGCTTTTGGCAACCAGG
CCCAGGTAGCTTGCCTTGCCGCCTCTGTGGTGAAGCCTCCCGAGGCCGGGCCCCATCTAGAGATGAAGGG
TCCTTATTGCTAGGCTCTCGCAGGCCTCGGCGTGATGCAGCAGAGCGATGTGCTGCTGCACTAATGGCCA
CCCGGCGGAAGAGTGAAGTCAAGCAGATGCCCAGGGCTGTACCTCCCACTCGTGTAACACGCCGCAGCAC
ACAAGAGAGCCTGGCAATAGGTGGAACAGACTCTAAGTTGTACCTCCCAGCCACCTCTTATGAGGCTTCT
GGCACAAAACAGCCATCTGCTCCAGCTGCAGCCTCTGCCTCCTCTTCCACATCATCCAAACGGGCTCCAG
CTAGCTCAGCCTCACAGCCTAAGCCCTTAAAGCGTTTCAAACGAGCTGCAGGGAAGAAAGGGCCCCGCAC
CCGTCAGGGGTCTGGTGCAGAGTCTGAAGACCTGTATGACTTTGTTTTTATTGTGGCTGGTGAGAAGGAG
GATGGTGAAGAGATGGAGATTGGGGAAGTAGCTTGTGGAGCTCTGGATGGGTCAGATCCCAGCTGTTTGG
GGCTCCCAGCACTAGAGGCATCCCAGCGATTCCGCAGCATTTCCACCTTGGAGCTATTCACAGTTCCTCT
CTCCACGGAGGCAGCTCTGACACTGTGCCATCTTCTGAGTTCCTGGGTATCACTGGAGAGCCTTACACTT
TCCTACAATGGTCTGGGCTCTAATATCTTCCGCCTCCTGGACAGCCTACGGGCCCTGTCAGGCCAGGCTG
GATGTCGCCTCCGTGCCCTGCATCTCAGTGACCTTTTCTCACCACTGCCCATCCTGGAATTGACCCGTGC
CATTGTGCGAGCCTTGCCCCTGTTGCGGGTCCTGTCTATTCGTGTTGACCACCCAAGCCAGAGGGACAAC
CCTGCTGTACCAGAGAATGCTGGGCCCCCTGGACACATAGTTGGGGATGAAGAAATACCAGAAAACTGCC
TCGAGCAGTTGGAAATGGGATTTCCACGAGGAGCCCAGCCAGCCCCACTGCTCTGCTCTGTCCTCAAGGC
CTCAGGTTCTCTACAGCAGCTGTCACTGGACAGTGCCACCTTTGCCTCGCCTCAAGATTTTGGGCTTGTG
TTGCAAACACTCAAAGAACACAACCTATCCCTGAAGAGGCTGAGCTTCCATGATATGAATCTTGCAGACT
GTCAGAGTGAAGTGCTTTTTTTGCTAAAGAATCTGACCCTTCAAGAGATTACCTTCTCCTTCTGCCGTCT
GTTTGAGAAGCGCCCAGTCCAATTTCTTCCTGAGATGGTTGCTGCTATGAAGGGCAACTCTACACTGAAG
GGCCTTCGACTACCAGGGAACCGCCTGGGGAACGCTGGCCTATTAGCCCTAGCAGATGTTTTCTCAGAGG
ATTCTTCCTCTTCTCTCTGTCAGCTGGACATCAGTTCCAACTGCATCAAGCCAGATGGGCTTTTGGAGTT
TGCCAAACGACTGGAGCGCTGGGGCCGAGGAGCCTTTGGTCACCTACGCCTCTTCCAGAACTGGCTGGAC
CAGGATGCAGTCACAGCAAGAGAAGCAATCCGGCGACTCCGGGCTACCTGCCACGTGGTTAGCGACTCAT
GGGACTCAACCCAGGCCTTTGCAGATTATGTCAGCACCATGTGA

Translation (807 aa):
MAAPEAWRARSCWFCEVAAATTMEATSREAAPAKSSASGPSAPPALFELCGRAVSAHMGVLESGVWALPG
PILQSILPLLNIYYLERIEETALKKGLSTQAIWRRLWDELMKTRPSSLESVTCWRAKFMEAFFSHVLRGT
IDVSSDKRLCDQRFSPLLHSSRHVRQLTICNMLQGATELVAEPNRRVLETLASSLHTLKFRHLLFSDVAA
QQSLRQLLHQLIHHGAVSQVSLYSWPVPESALFILILTMSAGFWQPGPGSLPCRLCGEASRGRAPSRDEG
SLLLGSRRPRRDAAERCAAALMATRRKSEVKQMPRAVPPTRVTRRSTQESLAIGGTDSKLYLPATSYEAS
GTKQPSAPAAASASSSTSSKRAPASSASQPKPLKRFKRAAGKKGPRTRQGSGAESEDLYDFVFIVAGEKE
DGEEMEIGEVACGALDGSDPSCLGLPALEASQRFRSISTLELFTVPLSTEAALTLCHLLSSWVSLESLTL
SYNGLGSNIFRLLDSLRALSGQAGCRLRALHLSDLFSPLPILELTRAIVRALPLLRVLSIRVDHPSQRDN
PAVPENAGPPGHIVGDEEIPENCLEQLEMGFPRGAQPAPLLCSVLKASGSLQQLSLDSATFASPQDFGLV
LQTLKEHNLSLKRLSFHDMNLADCQSEVLFLLKNLTLQEITFSFCRLFEKRPVQFLPEMVAAMKGNSTLK
GLRLPGNRLGNAGLLALADVFSEDSSSSLCQLDISSNCIKPDGLLEFAKRLERWGRGAFGHLRLFQNWLD
QDAVTAREAIRRLRATCHVVSDSWDSTQAFADYVSTM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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