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Report for CCDS37531.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
37531.1 Public Mus musculus 17 Srpk1 23 108 98 CCDS HistoryNCBI Gene:20815Re-query CCDS DB by CCDS ID:37531.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 37531.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000130643.8 ENSMUSP00000116259.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000130643.8Link to Ensembl Protein Viewer:ENSMUSP00000116259.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000130643Re-query CCDS DB by Protein ID:ENSMUSP00000116259
Original member Current member NCBI NM_016795.4 NP_058075.2 Accepted alive Link to Nucleotide Sequence:NM_016795.4Link to Protein Sequence:NP_058075.2Re-query CCDS DB by Nucleotide ID:NM_016795Re-query CCDS DB by Protein ID:NP_058075Link to BLAST:NP_058075.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_058075.2 648 O70551 648 100% 0 0

Chromosomal Locations for CCDS 37531.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28590057 28590241 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28591201 28591293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28592218 28592287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28594170 28594277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28598902 28599002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28599471 28599869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28600243 28600456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28600869 28600894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28602688 28602853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28603438 28603544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28605299 28605386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28606307 28606394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28607084 28607192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28608646 28608764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28621977 28622037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28622400 28622412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1947 nt):
ATGGAGCGGAAAGTGCTCGCGCTCCAGGCCCGAAAGAAAAGGACCAAGGCCAAGAAGGACAAAGCCCAAA
GGAAGCCTGAAACTCAGCACCGAGGCTCTGCACCCCACTCCGAGAGCGACATCCCAGAGCAGGAGGAGGA
GATTCTAGGGTCTGACGATGACGAGCAGGAAGACCCCAATGACTACTGTAAAGGAGGTTATCATCTTGTG
AAAATTGGAGATCTATTTAACGGGAGATACCATGTGATTCGAAAATTGGGCTGGGGACACTTTTCCACAG
TGTGGTTATCATGGGATATTCAGGGAAAGAAGTTTGTAGCAATGAAAGTAGTTAAAAGTGCTGAGCATTA
CACAGAAACAGCACTAGATGAAATCCGGCTGCTGAAATCGGTTCGCAACTCAGACCCGAATGATCCAAAT
GGAGAAATGGTTGTTCAACTACTAGATGACTTTAAAATATCAGGCGTTAATGGAACACATATCTGCATGG
TGTTTGAGGTTTTGGGGCATCATCTACTCAAGTGGATCATCAAGTCCAACTATCAGGGGCTTCCGCTGCC
TTGTGTCAAAAAAATTATTCAGCAAGTGCTACAGGGCCTGGATTACTTACACACCAAGTGCCGGATCATC
CACACGGACATCAAACCAGAGAACATCTTGTTGTCTGTGAATGAGCAGTACATTCGAAGGCTGGCTGCAG
AGGCCACAGAGTGGCAGCGCTCAGGAGCTCCCCCACCATCGGGGTCTGCAGTCAGCACTGCTCCACAGCC
TAAGCCAGCTGACAAAATGTCAAAGAATAAGAAGAAGAAATTGAAGAAGAAGCAGAAGCGCCAGGCAGAA
TTACTAGAGAAGCGAATGCAGGAAATTGAGGAAATGGAGAAAGAGTCGGGCCCTGGGCAAAAAAGACCTA
ACAAGCAAGAAGAATCAGAGAGTCCTGTTGACAGACCCCTGACAGAGAACCCACCTAATAAAATGACCCA
AGAGAAACTTGAAGAGTCAAATTCCATTGGCCAGGACCAGACACTCACGGAGCGTGGTGGAGAGGGTGGT
GCGCCAGAGATTAATTGCAATGGAGTGATTGGAGTCGTTAATTACCCTGAGAACAGTAATAATGAGACAC
TGAGGCATAAAGAGGATCTGCATAATGCTAATGACTGTGATGTCCACACTTTGAAGCAGGAACCTAGTTT
CCTAAACTCTTCAAATGGAGACAGCAGTCCATCTCAAGACACAGACTCTTGCACACCCACGGCCTCTGAG
ACCATGGTGTGCCAATCCTCTGCAGAGCAGTCACTCACCCGACAGGACATCACCCAGCTGGAGGAGAGCA
TTCGGGCAGATACACCTTCTGGGGATGAGCAGGAGCCCAATGGAGCCCTGGACAGCAAAGGAAAATTCTC
TGCTGGAAATTTTCTTATTAATCCCCTTGAGCCAAAAAATGCAGAGAAGCTCCAAGTGAAGATCGCAGAC
CTCGGGAACGCCTGCTGGGTGCACAAGCATTTCACTGAAGATATCCAGACACGGCAGTATCGGTCTTTGG
AAGTCCTGATAGGATCTGGCTACAACACCCCTGCTGACATCTGGAGCACAGCATGCATGGCCTTTGAACT
AGCCACAGGGGACTATTTGTTTGAGCCTCATTCAGGGGAGGATTACACACGAGATGAAGACCACATCGCC
CTGATCATAGAACTTCTGGGGAAGGTGCCTCGCAAGCTCATTGTGGCAGGAAAATACTCCAAGGAATTTT
TCACCAAAAAAGGTGACCTGAAGCACATCACCAAGTTGAAGCCTTGGGGTCTTCTGGAGGTTCTGGTGGA
GAAATATGAGTGGCCTCAGGAGGAGGCTGCCGGCTTCACAGATTTCCTGCTGCCCATGTTGGAGCTTATG
CCTGAGAAGAGAGCCACTGCTGCTGAGTGTCTCCGGCATCCTTGGCTAAACTCCTAA

Translation (648 aa):
MERKVLALQARKKRTKAKKDKAQRKPETQHRGSAPHSESDIPEQEEEILGSDDDEQEDPNDYCKGGYHLV
KIGDLFNGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAEHYTETALDEIRLLKSVRNSDPNDPN
GEMVVQLLDDFKISGVNGTHICMVFEVLGHHLLKWIIKSNYQGLPLPCVKKIIQQVLQGLDYLHTKCRII
HTDIKPENILLSVNEQYIRRLAAEATEWQRSGAPPPSGSAVSTAPQPKPADKMSKNKKKKLKKKQKRQAE
LLEKRMQEIEEMEKESGPGQKRPNKQEESESPVDRPLTENPPNKMTQEKLEESNSIGQDQTLTERGGEGG
APEINCNGVIGVVNYPENSNNETLRHKEDLHNANDCDVHTLKQEPSFLNSSNGDSSPSQDTDSCTPTASE
TMVCQSSAEQSLTRQDITQLEESIRADTPSGDEQEPNGALDSKGKFSAGNFLINPLEPKNAEKLQVKIAD
LGNACWVHKHFTEDIQTRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEDYTRDEDHIA
LIIELLGKVPRKLIVAGKYSKEFFTKKGDLKHITKLKPWGLLEVLVEKYEWPQEEAAGFTDFLLPMLELM
PEKRATAAECLRHPWLNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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