NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS23878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23878.1 Public Mus musculus 10 Nodal 23 108 98 CCDS HistoryNCBI Gene:18119Re-query CCDS DB by CCDS ID:23878.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000049339.6 ENSMUSP00000039653.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000049339.6Link to Ensembl Protein Viewer:ENSMUSP00000039653.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000049339Re-query CCDS DB by Protein ID:ENSMUSP00000039653
Original member Current member NCBI NM_013611.5 NP_038639.2 Accepted alive Link to Nucleotide Sequence:NM_013611.5Link to Protein Sequence:NP_038639.2Re-query CCDS DB by Nucleotide ID:NM_013611Re-query CCDS DB by Protein ID:NP_038639Link to BLAST:NP_038639.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038639.2 354 P43021 354 100% 0 0

Chromosomal Locations for CCDS 23878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 61418300 61418495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61422982 61423697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 61424484 61424636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1065 nt):
ATGAGTGCCCACAGCCTCCGCATCCTTCTTCTTCAAGCCTGTTGGGCTCTACTCCACCCGCGCGCCCCGA
CCGCGGCCGCTTTGCCTCTGTGGACACGGGGGCAGCCCTCGTCACCGTCCCCTCTGGCGTACATGTTGAG
CCTCTACCGAGACCCGCTGCCTCGGGCGGACATCATCCGCAGCCTCCAGGCGCAAGATGTGGACGTGACC
GGACAGAACTGGACTTTCACGTTTGACTTCTCTTTTTTGAGCCAAGAAGAGGATCTGGTATGGGCGGAGC
TCCGGTTGCAGCTGCCGGGCCCCATGGACATACCCACTGAGGGCCCACTCACCATTGACATTTTCCACCA
GGCCAAGGGGGATCCAGAGCGGGACCCCGCTGACTGCCTGGAGCGCATTTGGATGGAGACGTTCACCGTC
ATTCCTTCTCAGGTCACGTTTGCCTCAGGCAGCACAGTCCTGGAGGTGACCAAGCCACTCTCCAAGTGGC
TAAAGGACCCCAGGGCACTGGAAAAGCAGGTGTCCAGTCGAGCAGAAAAGTGTTGGCATCAGCCCTACAC
CCCACCTGTACCTGTCGCCAGCACCAATGTGCTCATGCTCTACTCCAACCGGCCTCAGGAGCAGAGGCAG
CTAGGGGGCGCCACTTTGCTTTGGGAAGCTGAGAGCTCCTGGCGGGCCCAGGAGGGACAGCTGTCTGTAG
AGAGGGGCGGATGGGGCAGAAGGCAACGCCGACATCATTTGCCAGACAGAAGCCAACTGTGTAGGAGGGT
CAAGTTCCAGGTGGACTTCAACCTGATTGGCTGGGGCTCCTGGATCATCTACCCCAAGCAGTACAATGCC
TATCGCTGTGAGGGCGAGTGTCCTAACCCTGTGGGGGAGGAGTTTCATCCTACCAACCATGCCTACATCC
AGAGCCTGCTGAAACGATACCAACCCCACCGGGTTCCTTCCACGTGCTGTGCCCCCGTGAAGACCAAGCC
ACTGAGCATGCTTTATGTGGACAATGGCAGGGTCCTCCTGGAACACCACAAGGACATGATTGTGGAGGAG
TGTGGGTGCCTCTGA

Translation (354 aa):
MSAHSLRILLLQACWALLHPRAPTAAALPLWTRGQPSSPSPLAYMLSLYRDPLPRADIIRSLQAQDVDVT
GQNWTFTFDFSFLSQEEDLVWAELRLQLPGPMDIPTEGPLTIDIFHQAKGDPERDPADCLERIWMETFTV
IPSQVTFASGSTVLEVTKPLSKWLKDPRALEKQVSSRAEKCWHQPYTPPVPVASTNVLMLYSNRPQEQRQ
LGGATLLWEAESSWRAQEGQLSVERGGWGRRQRRHHLPDRSQLCRRVKFQVDFNLIGWGSWIIYPKQYNA
YRCEGECPNPVGEEFHPTNHAYIQSLLKRYQPHRVPSTCCAPVKTKPLSMLYVDNGRVLLEHHKDMIVEE
CGCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH