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Report for CCDS28505.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
28505.1 Public Mus musculus 17 Ift140 23 108 98 CCDS HistoryNCBI Gene:106633Re-query CCDS DB by CCDS ID:28505.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 28505.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024983.11 ENSMUSP00000024983.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024983.11Link to Ensembl Protein Viewer:ENSMUSP00000024983.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000024983Re-query CCDS DB by Protein ID:ENSMUSP00000024983
Original member NCBI NM_134126.3 NP_598887.3 Updated not alive Link to Nucleotide Sequence:NM_134126.3Link to Protein Sequence:NP_598887.3Re-query CCDS DB by Nucleotide ID:NM_134126Re-query CCDS DB by Protein ID:NP_598887
Current member NCBI NM_134126.4 NP_598887.3 Accepted alive Link to Nucleotide Sequence:NM_134126.4Link to Protein Sequence:NP_598887.3Re-query CCDS DB by Nucleotide ID:NM_134126Re-query CCDS DB by Protein ID:NP_598887Link to BLAST:NP_598887.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598887.3 1464 E9PY46 1464 100% 0 0

Chromosomal Locations for CCDS 28505.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 25018792 25018938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25020518 25020739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25025550 25025671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25025804 25025946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25028804 25028979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25032085 25032176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25033083 25033189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25033886 25034031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25035703 25035906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25036271 25036343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25036958 25037049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25045049 25045176 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25045505 25045622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25048400 25048530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25050274 25050442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25051772 25051903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25055558 25055757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25086843 25087020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25087873 25088063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25088529 25088624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25088800 25088932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25089399 25089542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25090642 25090770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25090894 25091076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25092289 25092495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25092768 25092980 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25093063 25093229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25094640 25094781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 25098729 25098938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4395 nt):
ATGGCTCTGTATTTTGACCACCGAATCAAAGCTCCAGACACACCCAGCTCTCCCTCCCACATCACCTGGC
ACCCCACCCACCCATTCCTGGCAGTCGCATCTATAAGCCCATCTTCTGGAGGCAACGTAGACATCTACCT
TGAGCAAGGTGAGCCCGTGCCTGACACCCACATTGAGAGGTCTTTCCAGGCCACTTCACTGTGCTGGCAC
CCAACAAGGCTTATCCTGGCTATTGGCTGGGAAACTGGAGAAGTGATAATGTTTAATAAGCAGGACAAGG
AACAGCACACAGTGCCCCTGCCACATACGACTGACATTGCCATCCTCAGTTGGAGCACCAGTGGGAGCTG
CCTGGTATCTGGAGATAAGCTTGGGGTCCTGCTCTTGTGGAGATTGGACCAGCGAGGCCGAGTACAGGGA
ACACCACTCCTGAAACACGAATATGGGAAAGCACTCACCCATTGCATCTTCCGGCTCCCCCCTCCTGGGG
AGGATCTGGTTCAGTTGGCAAAGGCAGCAGTAAGCGGGGATGAGAAAGCCCTGGACATGTTTAACTGGAG
AAAAAGCAGCTTTGGAAGTTTCCTGAAGACGGGGTCTCAAGAGGGGCTGTCTTTCTTTGTCAGTCTCATG
GATGGCACAGTGCACTATGTGGATGAAAAGGGCAAGACTGCCCAGGTGGCATCCACAGACAGCTCCATCC
AGACCCTGTTCTACATTGAGAGGAGAGAGGCACTGGTTGTGGTCACAGAGAACCTTCTCCTGTCTCTGTA
TGTGGTGACTCCTGAGGGAGAAGCTGAAGAAGTCATGAAGGTAAAGTTGAGTGGGAAGACAGGCTGCCGG
GCAGATATCACTTTGATAGAGGGCAGCCTTCTGGTGACAGCTATTGGGGAGCCTGTGCTCAGGTTCTGGG
ACTTAGAACGGGGAGAGAATTACATACTGAGTCTACAGGAGAAGTTTGGCTTTGAAAAGGGAGAGAGTAT
AAACTGTGTGTGTTTCTGTAAAGCCAAAGGTCTCCTAGCAGCAGGTACCAATAAAGGACGAGTAGCTATG
TGGAAAAAAGTGCCAAGCTTCCCAAATGGCCGTGGGGCGGAGGGCAAGGACATGTGGGCCCTTCAGACCC
CTACTGAGCTTGAAGGGAACATCACACAGATAAAGTGGGGCTCCAGGAAGAACCTTCTGGCAGTGAGCAG
CACCGAGTCTGTGTCCATCCTCAGTGAGCAAGCCATGTCGTCACACTTCCACCAGCAAGTAGCTGCCGTG
CAGATCTCCCCGAGCCTAGTCAACGTGTCTTTCCTGTCCACGGGGGGCACACACAGCCTGCACACCGACA
TGCACATCAGTGGAGTGTTCGCCACCAAGGATGCTGTGGCTGTCTGGAATGGAAAACAGGTGGCGATCTT
TGAACCTTCAGGATCCACCTTAAGGAATGCAGGGACATTCCTGTGTGAAACATCAGTGCTAGCCATGCAT
GAGGAAAGCATTTACACCGTGGAGCCAAACCGACTCCAAGTCCGGACCTGGCAGGGGACTGTCAAACAAC
TTCTGCTATTCTCTGAGACCGAGGGGAGCCCCTGCTTCCTGGACGTCTGTGGGACTTTCCTGGTTGCAGG
GACAGATTTAGCTCATTTTAAAAGTTTTGATCTTTCCAGAAGGGAAGCAAAAGTGCACTGCAGCTGCAAG
AACCTGGCCCAGCTGGTCCCTGATGTGGGGAGCATCACTTCTCTGAGATGCAATGCAAATGGGAACAAGA
TCAGCATCCTCCTTAGCAAGGTCAACAACAGTCCTGATTCCAAAATCTACATCTATGATGTTGAAATGGA
CACAGTGAACGTCTTCAACTTCACAACTGGACAGATTGGACAGATACAGACTCTGCCCTTTAACGAGCCG
CCGACTAATGAGACCCGTTCCTTTATGGACAAGAGCCTAGCAGGTTACACGCCGGTGAACCATTTCTGGG
ATCAGAGTGAGCCCAGGCTCTTTGTGTGCGAGGCCTTGCAGGAGGCCCCTGGAGCCCAGCCACAGGCTGT
AGACAAGCAGCCCCGTGTAGAGGAGGGCACATGCCACAAGGAAGAAGTGTTGATTCTCTCCTTCTTTGCT
TCTGAAGAGCATGGCTTTCTGCTCCATGACAGCTTCCCCCGGCCTTCAACCTACCAGAGCCTTCTGGGCA
TGGAAGTGCCTCACTATTACTTCACAAAAAAGCCTGGAGAAGCAGACAAAGAAGACAGGGTGGATTCTGG
GTACTACCACATCCCTCAGATGGTAGCCAAGAGGCCCCTACGAGACTTTGTGGGGCTGGAGGACTGTGAC
AAGTCTACTCGGGATGCCATGCTCAACTTTAGCTTCTTTGTCACCATTGGAGACATGGATGAAGCTTTCA
AGTCTATCAAACTCATCAAGAGTGAGGCTGTCTGGGAGAACATGGCACGCATGTGTGTGAAGACTCAACG
GCTAGATGTTGCCAAGGTGTGCCTAGGGAACATGGGCCACGCCCGTGGGGCCCGAGCACTGCGGGAAGCT
GAGCAGGAGCCAGAACTGGAAGCCAGAGTGGCCATGCTGGCCATACAGCTGGGCATGCTGGAGGAGGCAG
AACAACTGTATAAGAAGTGCAAACGCTACGACCTCCTGAACAAGTTCTACCAGGCCTCAGACCAGTGGCA
GAAAGCTGTGGAGGTTGCGGAGCTCCACGACCGTGTCCACCTGCGCACCACCTACTACAACTACGCCAAG
CACCTGGAGGCCAGCGCTGACTGTGGCCAGGCCCTCAGTTATTATGAGAAGTCAGACACCCACCGTTTTG
AGGTACCTAGGATGCTCTCAGAAGACCTGCAGTCCCTGGAGCTCTACATCAATAGGATGAAGGACAAGAC
CCTCTGGAGATGGTGGGCCCAGTATCTTGAGAGCCAGGCAGAGATGGACACTGCACTGCGCTACTATGAG
CTGGCGCAGGACTACTTCTCCCTGGTCCGTATTCACTGCTTCCAGGGCAACATTCAGAAGGCTGCTGAAA
TAGCCAACGAGACTGGAGACTGGGCTGCATCCTACCACCTTGCCCGGCAGTACGAGAGCCAGGATGAGGT
AAAACAGGCAGTGCACTTCTACACTCGGGCACAGGCTTTCAACAACGCCATCCGCCTGTGCAAGGAGAAC
GGCTTAGATGACCAGCTCATGAACTTGGCGCTGTTGAGTTCCCCAGAGGACATGATTGAGGCAGCCCGGT
ATTATGAGGAGAAGGGCGAGCAGATGGACAGGGCTGTCATGCTGTACCACAAGGCTGGACACTTTTCCAA
GGCCCTGGAGCTGGCCTTCACCACCCAGCAGTTTGCAGCACTACAGCTCATAGCCGAGGACCTGGATGAG
AAGTCAGATCCTGCTCTCCTGGCCCGCTGCTCAGACTTCTGCATTGAGCACAGGCAGTTTGAAAAGGCTG
TGGAGCTTCTCCTGGCTGCCAAGAAGTACCATGAGGCTCTGCAGCTGTGCCTTGAGCAGAACATGACCAT
CACTGAGGACATGGCAGAGAAGATGACTGTGTCCAAGGACTCAAAGGACATGTCTGAGGAGTCACGGCGT
GAGCTTCTGGAGCAGATTGCCAACTGCTGTATGCGCCAGGGCAACTATCACCTGGCCACCAAGAAGTACA
CACAGGCTGGGAACAAGCTAAAGGCCATGAGAGCACTGCTCAAATCTGGAGACACAGAGAAAATTGTGTT
CTTTGCGGGTGTCTCAAGACAGAAGGAAATCTACATCATGGCTGCCAATTACCTACAGTCCCTGGACTGG
CGGAAGGAGCCAGAGATCATGAAGAGTATCATTAGCTTCTACACCAAAGGGCGGGCCTTGGACCTCCTGG
CTGGCTTCTATGATGCCTGTGCCCAGGTGGAGATTGACGAATACCAGAACTATGACAAGGCCCATGGAGC
ACTGACTGAGGCCTATAAGTGCCTGTCCAAAGCCAAGACCAAGAACCCCCTGGACCAGGAGACCAAGCTA
GCCCAGCTACAGAGCAAGATGACACTGGTGAAGAGGTTCATCCAGGCCCGAAGGACATACACAGAGGACC
CCAAAGAGTCCCTCAGGCAGTGTGAGCTGCTCCTAGAAGAGCCAGACCTGGACAGCACCATCCGTGTCGG
AGACGTCTATGGCTTCCTGGTGGAACACCATGTACAGATGGAGGAATACCAGATGGCCTATAAGTATCTT
GAGGAGATGAGGAAAAGACTTCCTTCCGCCAACATGTCATACTATGTGGACCAGCGCACTGTGGACACTG
TGCACCAGGGCCTGGGCCTCCTCCCTCCATCTCGTATCATGCCTGAGCGGGTCCGCCACAATAGCATGGA
GGACCATAAGGAGGTGTACGAGGAGGTGATAGAAGAGGTGGACAATGACCCCTGA

Translation (1464 aa):
MALYFDHRIKAPDTPSSPSHITWHPTHPFLAVASISPSSGGNVDIYLEQGEPVPDTHIERSFQATSLCWH
PTRLILAIGWETGEVIMFNKQDKEQHTVPLPHTTDIAILSWSTSGSCLVSGDKLGVLLLWRLDQRGRVQG
TPLLKHEYGKALTHCIFRLPPPGEDLVQLAKAAVSGDEKALDMFNWRKSSFGSFLKTGSQEGLSFFVSLM
DGTVHYVDEKGKTAQVASTDSSIQTLFYIERREALVVVTENLLLSLYVVTPEGEAEEVMKVKLSGKTGCR
ADITLIEGSLLVTAIGEPVLRFWDLERGENYILSLQEKFGFEKGESINCVCFCKAKGLLAAGTNKGRVAM
WKKVPSFPNGRGAEGKDMWALQTPTELEGNITQIKWGSRKNLLAVSSTESVSILSEQAMSSHFHQQVAAV
QISPSLVNVSFLSTGGTHSLHTDMHISGVFATKDAVAVWNGKQVAIFEPSGSTLRNAGTFLCETSVLAMH
EESIYTVEPNRLQVRTWQGTVKQLLLFSETEGSPCFLDVCGTFLVAGTDLAHFKSFDLSRREAKVHCSCK
NLAQLVPDVGSITSLRCNANGNKISILLSKVNNSPDSKIYIYDVEMDTVNVFNFTTGQIGQIQTLPFNEP
PTNETRSFMDKSLAGYTPVNHFWDQSEPRLFVCEALQEAPGAQPQAVDKQPRVEEGTCHKEEVLILSFFA
SEEHGFLLHDSFPRPSTYQSLLGMEVPHYYFTKKPGEADKEDRVDSGYYHIPQMVAKRPLRDFVGLEDCD
KSTRDAMLNFSFFVTIGDMDEAFKSIKLIKSEAVWENMARMCVKTQRLDVAKVCLGNMGHARGARALREA
EQEPELEARVAMLAIQLGMLEEAEQLYKKCKRYDLLNKFYQASDQWQKAVEVAELHDRVHLRTTYYNYAK
HLEASADCGQALSYYEKSDTHRFEVPRMLSEDLQSLELYINRMKDKTLWRWWAQYLESQAEMDTALRYYE
LAQDYFSLVRIHCFQGNIQKAAEIANETGDWAASYHLARQYESQDEVKQAVHFYTRAQAFNNAIRLCKEN
GLDDQLMNLALLSSPEDMIEAARYYEEKGEQMDRAVMLYHKAGHFSKALELAFTTQQFAALQLIAEDLDE
KSDPALLARCSDFCIEHRQFEKAVELLLAAKKYHEALQLCLEQNMTITEDMAEKMTVSKDSKDMSEESRR
ELLEQIANCCMRQGNYHLATKKYTQAGNKLKAMRALLKSGDTEKIVFFAGVSRQKEIYIMAANYLQSLDW
RKEPEIMKSIISFYTKGRALDLLAGFYDACAQVEIDEYQNYDKAHGALTEAYKCLSKAKTKNPLDQETKL
AQLQSKMTLVKRFIQARRTYTEDPKESLRQCELLLEEPDLDSTIRVGDVYGFLVEHHVQMEEYQMAYKYL
EEMRKRLPSANMSYYVDQRTVDTVHQGLGLLPPSRIMPERVRHNSMEDHKEVYEEVIEEVDNDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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