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Report for CCDS36068.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
36068.1 Public Mus musculus 10 Nup107 23 108 98 CCDS HistoryNCBI Gene:103468Re-query CCDS DB by CCDS ID:36068.1See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 36068.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000064848.6 ENSMUSP00000063590.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000064848.6Link to Ensembl Protein Viewer:ENSMUSP00000063590.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000064848Re-query CCDS DB by Protein ID:ENSMUSP00000063590
Original member NCBI NM_134010.2 NP_598771.1 Updated not alive Link to Nucleotide Sequence:NM_134010.2Link to Protein Sequence:NP_598771.1Re-query CCDS DB by Nucleotide ID:NM_134010Re-query CCDS DB by Protein ID:NP_598771
Current member NCBI NM_134010.3 NP_598771.1 Accepted alive Link to Nucleotide Sequence:NM_134010.3Link to Protein Sequence:NP_598771.1Re-query CCDS DB by Nucleotide ID:NM_134010Re-query CCDS DB by Protein ID:NP_598771Link to BLAST:NP_598771.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598771.1 926 Q8BH74 926 100% 0 0

Chromosomal Locations for CCDS 36068.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117750860 117750967 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117751320 117751487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117757267 117757380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117757896 117758021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117759172 117759332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117761245 117761347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117762023 117762135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117763731 117763881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117764317 117764355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117765911 117766029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117766334 117766403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117770188 117770236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117770376 117770521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117771334 117771393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117773055 117773131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117773276 117773366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117774456 117774569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117776211 117776289 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117777129 117777217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117777593 117777664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117780678 117780726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117781321 117781448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117781957 117782060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117784995 117785139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117787793 117787911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117789974 117790060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117790467 117790558 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117792604 117792611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2781 nt):
ATGGACAGGAGTGGCTTCGGGGGGATGTCATCCCCTGTGATCCGGGATGCGGAGGTGACGAGGACTGCCC
GGAAGCACAGTGCTCACAAAAGAGTTCTAATTCAGGCCAACCAAGAGGACAATTTTGGTACTGCTACACC
AAGAAGCCAGATCATTCCTCGAACGCCAAGCTCCTTTCGACAGCCTTTTGTTACTCCATCGAGCCGAAGC
CTACTGAGACACCCGGATATTTCCTACATTCTTGGAACGGAAGGGAGGTCTCCCCGGCACACACAGTCTT
CTGGGTACTTGGGAAATCTTTCTATGGTGACTAATCTTGATGACAGCAACTGGGCAGCTGCATTCTCATC
CCAGCGTTTAGGGCTCTACACAAACACAGAGCATCATAGTATGACCGAGGATGTGAACCTAAGTACTGTC
ATGCTACGGGAAGACGACCCTGGAGAGGCTGCATCCATGAGCATGTTCTCTGATTTCCTGCACTCTTTCT
TGAAGCACTCTTCAACCACAGTCTTTGATCTCGTAGAAGAATATGAAAATATTTGTGGTAGTCAGGTGAA
TATCCTCAGTAAAATAGTGAGCCGCGCAACGCCTGGACTGCAGAAGTTTTCCAAGACGGCCAGTATGCTC
TGGCTTCTCCAACAGGAGATGGTCACATGGAGGCTGCTCGCCTCTTTGTACAGAGACAGAATACAGTCTT
CATTAGAAGAGGAAAATATGTTTGCAATTGCTGGTATTAATGCCAGCGAGAAGATGGTTGTGGAAACGCT
GTTTCAGAGGGACTCACTGGTCCGGCAGAGCCAGTTGGTGGTAGATTGGCTAGAGAGTATTGCCAAAGAT
GAAATCGGAGAATTCTCGGACAATATTGAGTTTTATGCAAAATCAGTGTATTGGGAAAATACCCTCCACT
CCTTAAAGCAGCGGCAGCTACTGTCTCACATGGGAAGTACCCGGCCTCTGGTCACCGAACTGGACCCAGA
CGCTCCCATTAGACAGAAGTTGCCACTCGACGATCTGGACAGAGAGGACGAGGTCAGACTGCTGAAGTAC
CTCTTCACGCTCATCCGTGCTGGCATGACAGAGGAGGCACAACGGCTCTGTAAACGGTGTGGGCAAGCAT
GGCGAGCTGCAACCCTGGAAGGCTGGAAACTGTACCATGACCCTAATGTTAATGGAGGGACAGAGCTAGA
ACCTGTTGAAGGGAATCCATATAGACGCATCTGGAAGATTAGTTGCTGGAGAATGGCTGAAGATGAACTT
TTTAATAAATATGAAAGAGCGATTTACGCGGCACTGAGTGGGAACCTTAAGCAGCTCCTTCCAGTCTGTG
ACACGTGGGAAGACACGGTGTGGGCCTACTTCCGGGTGATGGTGGATAGCCTGGTGGAGCAGGAGATTCG
GACATCAGTAATGACGCAGGATGACAGTGAGGAGCTCCCTCGAGAGTACATGGAAGCCAATTGGACCTTA
GAAAAAGTTTTTGAAGAACTTCAAGCCACTGATAAAAAGAGAGTTCTGGAGGAGAATCAAGAGCATTACC
ATATAGTTCAGAAATTCCTTATCCTGGGAGACGTTGATGGTTTGATGGATGAATTTAGCAAATGGCTGTC
CAAGAGCGGAAGCAGTCTGCCCGGACACCTGCTCCGCTTCATGACACACCTCATTCTGTTTCTCCGCACC
CTAGGCCTCCAGACCAAGGAAGAAGTTTCCATTGAAGTTCTAAAAACATATATACAGCTGTTAATAAGCG
AGAAGCACACAAGCCTCATAGCGTTCTATACCTGTCATCTGCCTCAAGACCTCGCCGTGGCCCAGTATGC
CTTATTTTTGGAAGGTGTTACGGAATTTGAGCAGCGGCACCAGTGCCTAGAGCTGGCTAAGGAAGCAGAC
TTGGATGTTGCGACGATAACGAAAACTGTAGTTGAGAATATTTGCAAGAAAGATAATGGTGAATTTAGTC
ACCATGACCTGGCTCCATCCCTAGACACTGGCACTACTGAGGAGGACCGCCTGAAGATTGATGTGATCGA
CTGGCTCGTGTTTGACCCGGCACAGAGAGCGGAAGCCCTGAGGCAAGGCAACGCCATCATGAGGAAGTTC
TTAGCATTAAAGAAACATGAAGCTGCAAAAGAAGTGTTTGTGAAAATTCCTCAGGATTCCATCGCAGAGA
TCTATAATCAGTGGGAGGAGCAAGGCATGGAGAGCCCTCTTCCTGCCGAGGATGATAACGCCATCCGAGA
GCATTTGTGTATCAGAGCCTATCTGGAAGCCCATGAAACCTTCAACGAATGGTTTAAACATATGAATTCG
GCTCCACAGAAACCTACATTACTATCTCAAGCAACTTTTACAGAGAAAGTGGCTTATGAACACAGAGAAA
AGAAATACGAGATGGATCATAATATTTGGAAAGGACATTTGGATGCCCTAACTGCTGATGTGAAGGAGAA
AATGTACAACGTCTTGTTGTTTGTTGATGGAGGATGGATGGTGGATGTCAGAGAGGACGCCGAGGACGAC
CCTGAGCGGACGCATCAGATGGTTTTACTGAGGAAGCTCTGTCTCCCCATGCTGTGCTTCCTGCTTCACA
CCATACTGCACAGCACCGGACAGTACCAGGAGTGCCTGCAGCTGGCCGACATGGTGTCCTCTGAGCGCCA
CAAGCTCTATCTGGTGTTTTCTAAGGAAGAACTAAGGAAACTGCTGCAGAAGTTAAGGGAGTCCTCTCTA
ATGCTCCTAGACCAGGGGCTCGACCCGCTTGGCTATGAAATTCAGTCATAA

Translation (926 aa):
MDRSGFGGMSSPVIRDAEVTRTARKHSAHKRVLIQANQEDNFGTATPRSQIIPRTPSSFRQPFVTPSSRS
LLRHPDISYILGTEGRSPRHTQSSGYLGNLSMVTNLDDSNWAAAFSSQRLGLYTNTEHHSMTEDVNLSTV
MLREDDPGEAASMSMFSDFLHSFLKHSSTTVFDLVEEYENICGSQVNILSKIVSRATPGLQKFSKTASML
WLLQQEMVTWRLLASLYRDRIQSSLEEENMFAIAGINASEKMVVETLFQRDSLVRQSQLVVDWLESIAKD
EIGEFSDNIEFYAKSVYWENTLHSLKQRQLLSHMGSTRPLVTELDPDAPIRQKLPLDDLDREDEVRLLKY
LFTLIRAGMTEEAQRLCKRCGQAWRAATLEGWKLYHDPNVNGGTELEPVEGNPYRRIWKISCWRMAEDEL
FNKYERAIYAALSGNLKQLLPVCDTWEDTVWAYFRVMVDSLVEQEIRTSVMTQDDSEELPREYMEANWTL
EKVFEELQATDKKRVLEENQEHYHIVQKFLILGDVDGLMDEFSKWLSKSGSSLPGHLLRFMTHLILFLRT
LGLQTKEEVSIEVLKTYIQLLISEKHTSLIAFYTCHLPQDLAVAQYALFLEGVTEFEQRHQCLELAKEAD
LDVATITKTVVENICKKDNGEFSHHDLAPSLDTGTTEEDRLKIDVIDWLVFDPAQRAEALRQGNAIMRKF
LALKKHEAAKEVFVKIPQDSIAEIYNQWEEQGMESPLPAEDDNAIREHLCIRAYLEAHETFNEWFKHMNS
APQKPTLLSQATFTEKVAYEHREKKYEMDHNIWKGHLDALTADVKEKMYNVLLFVDGGWMVDVREDAEDD
PERTHQMVLLRKLCLPMLCFLLHTILHSTGQYQECLQLADMVSSERHKLYLVFSKEELRKLLQKLRESSL
MLLDQGLDPLGYEIQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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