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Report for CCDS79267.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
79267.1 Public Mus musculus 14 Ppp3cb 23 108 98 CCDS HistoryNCBI Gene:19056Re-query CCDS DB by CCDS ID:79267.1Re-query CCDS DB by GeneID:19056See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 19, NCBI annotation release 105, Ensembl annotation release 81

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 79267.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000022355.10 ENSMUSP00000022355.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000022355.10Link to Ensembl Protein Viewer:ENSMUSP00000022355.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000022355Re-query CCDS DB by Protein ID:ENSMUSP00000022355
Original member Current member NCBI NM_001310427.1 NP_001297356.1 Accepted alive Link to Nucleotide Sequence:NM_001310427.1Link to Protein Sequence:NP_001297356.1Re-query CCDS DB by Nucleotide ID:NM_001310427Re-query CCDS DB by Protein ID:NP_001297356Link to BLAST:NP_001297356.1

Chromosomal Locations for CCDS 79267.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 14 (NC_000080.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 20501484 20501662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20508624 20508721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20509416 20509500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20515523 20515600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20520554 20520679 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20523580 20523674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20523779 20523856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20523960 20524099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20524357 20524502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20528158 20528269 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20530944 20531068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20531660 20531860 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 20546356 20546440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1548 nt):
ATGGCCGCCCCGGAGCCGGCCCGGGCCGCGCCGCCCCCGCCCCCGCCCCCACCGCCCCCTCTCGGGGCCG
ACCGCGTCGTCAAAGCTGTTCCTTTTCCCCCAACTCATCGGCTGACATCTGAAGAAGTGTTTGATATGGA
TGGGATACCCAGGGTTGATGTTCTGAAGAACCACTTGGTAAAAGAAGGGCGGGTGGATGAAGAAATTGCA
CTAAGAATTATCAATGAGGGTGCTGCCATACTTCGGCGGGAGAAAACCATGATAGAAGTAGAAGCTCCAA
TTACAGTGTGTGGTGACATCCATGGCCAATTTTTTGATCTGATGAAACTTTTTGAAGTAGGAGGATCACC
TGCTAATACACGATACCTTTTTCTTGGTGATTATGTGGACAGAGGTTATTTTAGTATAGAGTGTGTCTTA
TATTTATGGGTCTTGAAGATTCTATACCCAAGCACATTATTCCTTCTGAGAGGCAACCATGAATGCAGAC
ACCTTACTGAATATTTTACCTTTAAGCAGGAATGTAAAATTAAATATTCAGAAAGAGTCTATGAAGCTTG
TATGGAGGCTTTTGACAGCTTGCCCCTTGCTGCACTTCTAAACCAACAATTTCTTTGTGTTCATGGTGGA
CTTTCACCAGAAATACACACACTGGATGATATTAGGAGATTAGATAGATTTAAAGAGCCACCTGCATTTG
GACCAATGTGTGACTTGCTATGGTCTGATCCTTCTGAAGACTTTGGAAATGAAAAATCACAAGAACATTT
TAGTCATAATACAGTTCGAGGATGTTCTTATTTTTATAACTATCCAGCAGTGTGTGAATTTTTGCAAAAC
AATAATTTGTTATCGATTATTAGAGCTCATGAAGCTCAAGATGCAGGCTATAGAATGTACAGAAAAAGTC
AAACTACAGGGTTTCCTTCATTAATAACAATTTTTTCGGCACCTAATTACTTAGATGTCTACAATAATAA
AGCTGCTGTACTAAAGTATGAAAATAATGTGATGAACATTCGACAGTTTAATTGCTCTCCACATCCTTAT
TGGTTGCCCAATTTTATGGATGTCTTTACATGGTCTTTACCATTTGTTGGAGAAAAAGTGACAGAAATGT
TGGTAAATGTTCTGAGTATTTGTTCTGATGATGAACTAATGACAGAAGGTGAAGACCAGTTTGATGTAGG
TTCAGCTGCAGCCCGGAAAGAAATCATAAGAAACAAGATCCGAGCAATTGGCAAGATGGCAAGAGTCTTC
TCTGTTCTCAGGGAGGAGAGTGAAAGCGTGCTGACACTCAAGGGCCTGACTCCCACAGGGATGTTGCCTA
GTGGAGTGTTGGCTGGAGGACGGCAGACCTTGCAAAGTGCAATACGAGGATTCTCTCCACCACATAGAAT
CTGCAGTTTTGAAGAGGCAAAGGGTTTGGATAGGATCAATGAGAGAATGCCACCCCGGAAAGATGCTGTG
CAGCAAGATGGTTTCAATTCCCTGAACACCGCACATACCACTGAGAACCACGGGACTGGCAACCATAGTG
CCCAGTGA

Translation (515 aa):
MAAPEPARAAPPPPPPPPPPLGADRVVKAVPFPPTHRLTSEEVFDMDGIPRVDVLKNHLVKEGRVDEEIA
LRIINEGAAILRREKTMIEVEAPITVCGDIHGQFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVL
YLWVLKILYPSTLFLLRGNHECRHLTEYFTFKQECKIKYSERVYEACMEAFDSLPLAALLNQQFLCVHGG
LSPEIHTLDDIRRLDRFKEPPAFGPMCDLLWSDPSEDFGNEKSQEHFSHNTVRGCSYFYNYPAVCEFLQN
NNLLSIIRAHEAQDAGYRMYRKSQTTGFPSLITIFSAPNYLDVYNNKAAVLKYENNVMNIRQFNCSPHPY
WLPNFMDVFTWSLPFVGEKVTEMLVNVLSICSDDELMTEGEDQFDVGSAAARKEIIRNKIRAIGKMARVF
SVLREESESVLTLKGLTPTGMLPSGVLAGGRQTLQSAIRGFSPPHRICSFEEAKGLDRINERMPPRKDAV
QQDGFNSLNTAHTTENHGTGNHSAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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