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Report for CCDS71230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71230.1 Public Mus musculus 3 Skil 23 108 98 CCDS HistoryNCBI Gene:20482Re-query CCDS DB by CCDS ID:71230.1Re-query CCDS DB by GeneID:20482See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000117728.7 ENSMUSP00000113054.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000117728.7Link to Ensembl Protein Viewer:ENSMUSP00000113054.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000117728Re-query CCDS DB by Protein ID:ENSMUSP00000113054
Original member NCBI NM_001271772.1 NP_001258701.1 Updated not alive Link to Nucleotide Sequence:NM_001271772.1Link to Protein Sequence:NP_001258701.1Re-query CCDS DB by Nucleotide ID:NM_001271772Re-query CCDS DB by Protein ID:NP_001258701
Current member NCBI NM_001271772.2 NP_001258701.1 Accepted alive Link to Nucleotide Sequence:NM_001271772.2Link to Protein Sequence:NP_001258701.1Re-query CCDS DB by Nucleotide ID:NM_001271772Re-query CCDS DB by Protein ID:NP_001258701Link to BLAST:NP_001258701.1

Chromosomal Locations for CCDS 71230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 31097331 31097465 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31097706 31098419 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31111625 31111722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31113408 31113502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31116816 31117039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31117373 31117597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 31118455 31118613 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1650 nt):
ATGGAAAACCTCCAGTCTAAGTTCTCCTTAGTTCAGGGTTCAAATAAAAAGCTGAACGGCATGGAGGATG
ATGGCAGTCCTCCTGTGAAAAAAATGATGACCGACATTCATGCCAATGGGAAAACCCTGACCAAGGTTCT
TCCCGGCCCTCTTCTCATTCCTTCTGATAGCTCCACAGAGCTCACTCAGACTCTTTTGGAAGGGGAGTCT
ATTTCTTGTTTTCAAGTTGGAGGAGAAAAGAGACTCTGTTTGCCCCAAGTCTTAAACTCTGTCCTCCGAG
AATTTTCACTCCAGCAGATAAACACAGTATGTGATGAGCTGTACATCTATTGTTCAAGGTGTACTTCAGA
CCAGCTTCATATCTTAAAGGTCTTAGGGATACTCCCATTTAATGCTCCATCCTGTGGGCTGATCACGTTG
ACCGATGCACAAAGACTCTGTAATGCTTTACTGCGGCCACGAACTTTTCCTCAAAATGGTAGCATACTTC
CTGCTAAAAGCTCTCTGGCCCAGTTGAAGGAAACTGGCAGTGCCTTTGAAGTGGAACATGAATGCTTGGG
CAAATGTCAGGGTCTCTTTGCGCCTCAGTTTTATGTTCAGCCCGACGCTCCCTGTATCCAGTGCCTGGAG
TGCTGTGGAATGTTTGCTCCCCAGACGTTCGTCATGCATTCGCACAGATCCCCTGACAAGAGAACTTGCC
ATTGGGGCTTTGAGTCAGCCAAGTGGCACTGTTACCTTCATGTGAACCAAAAATACCTAGGGACACCCGA
AGAAAAGAAACTGAAGATAATTTTAGAAGAAATGAAGGAGAAGTTTAGCATGAGAAATGGAAAGAGAATC
CAATCAAAGACAGATACACCATCGGGAATGGAATTGCCATCATGGTATCCTGTTATAAAACAGGAAGGTG
ACCATGTTCCCCAGACACATTCATTTTTACACCCCAGCTACTACCTGTACATGTGTGACAAAGTGGTTGC
ACCGAATGTGTCGCTCACATCTGCTGCGTCCCAGTCTAAAGAGGCCACCAAGGCAGAGACAAATTCATCA
ATCTCAAATAATTCTACAAGTAGAAAGAAATCTGAGTCTGCTGTGTGCAGCTTAGTGAGAGGCACAAGCA
AGCGTGATTCAGAAGATTCCTCTCCACTTCTGGTCAGAGATGGTGAAGACGACAAGGGGAAGATCATGGA
AGACGTGATGAGAACCTATGTAAGACAGCAGGAGAAGCTGAACTCCATTCTGCAGAGGAAGCAGCAGCTG
CAGATGGAGGTGGAGATGCTGAGCAGTTCAAAGGCGATGAAGGAGCTCACTGAAGAGCAGCAGAATCTAC
AGAAAGAGCTTGAGTCGTTACAGAGTGAGCATGCTCAGAGGATGGAGGAATTCTATATTGAACAGAGAGA
CTTAGAGAAAAAGCTGGAGCAGGTGATGCAGCAGAAATGCACCTGTGACTCAACCTTGGAGAAGGACAGG
GAGGCCGAGTATGCGGCTCAGCTGGCAGAACTGAGGCAAAGACTAGACCATGCTGAGGCCGACAGGCAGG
AACTCCAAGATGAACTCAGACAGGAGCGGGAGGCGAGACAGAAGCTGGAGATGATGATAAAGGAGCTGAA
GCTGCAGATTGGCAAGTCGTCCAAGCCCTCCAAGGACTAA

Translation (549 aa):
MENLQSKFSLVQGSNKKLNGMEDDGSPPVKKMMTDIHANGKTLTKVLPGPLLIPSDSSTELTQTLLEGES
ISCFQVGGEKRLCLPQVLNSVLREFSLQQINTVCDELYIYCSRCTSDQLHILKVLGILPFNAPSCGLITL
TDAQRLCNALLRPRTFPQNGSILPAKSSLAQLKETGSAFEVEHECLGKCQGLFAPQFYVQPDAPCIQCLE
CCGMFAPQTFVMHSHRSPDKRTCHWGFESAKWHCYLHVNQKYLGTPEEKKLKIILEEMKEKFSMRNGKRI
QSKTDTPSGMELPSWYPVIKQEGDHVPQTHSFLHPSYYLYMCDKVVAPNVSLTSAASQSKEATKAETNSS
ISNNSTSRKKSESAVCSLVRGTSKRDSEDSSPLLVRDGEDDKGKIMEDVMRTYVRQQEKLNSILQRKQQL
QMEVEMLSSSKAMKELTEEQQNLQKELESLQSEHAQRMEEFYIEQRDLEKKLEQVMQQKCTCDSTLEKDR
EAEYAAQLAELRQRLDHAEADRQELQDELRQEREARQKLEMMIKELKLQIGKSSKPSKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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