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Report for CCDS56680.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
56680.1 Public Mus musculus 10 Syne1 23 108 98 CCDS HistoryNCBI Gene:64009Re-query CCDS DB by CCDS ID:56680.1Re-query CCDS DB by GeneID:64009See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 10, NCBI annotation release 38.1, Ensembl annotation release 68

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 56680.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041639.6 ENSMUSP00000039440.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041639.6Link to Ensembl Protein Viewer:ENSMUSP00000039440.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000041639Re-query CCDS DB by Protein ID:ENSMUSP00000039440
Original member NCBI NM_153399.2 NP_700448.2 Updated not alive Link to Nucleotide Sequence:NM_153399.2Link to Protein Sequence:NP_700448.2Re-query CCDS DB by Nucleotide ID:NM_153399Re-query CCDS DB by Protein ID:NP_700448
Current member NCBI NM_153399.3 NP_700448.2 Accepted alive Link to Nucleotide Sequence:NM_153399.3Link to Protein Sequence:NP_700448.2Re-query CCDS DB by Nucleotide ID:NM_153399Re-query CCDS DB by Protein ID:NP_700448Link to BLAST:NP_700448.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700448.2 1431 Q6ZWR6-5 1431 100% 0 0

Chromosomal Locations for CCDS 56680.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 5339203 5339385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5342154 5342294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5343358 5343522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5344795 5344962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5346821 5346985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5347822 5347930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5348541 5348749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5348929 5349087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5349257 5349391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5350865 5351029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5352052 5352210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5353815 5353988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5356677 5356820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5358334 5358486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5358941 5359105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5360674 5360876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5361485 5361581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5367491 5367659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5368192 5368304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5403841 5404005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5405425 5405562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5409764 5409871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5416790 5416899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5420380 5420576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5424204 5424382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5425668 5425760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5426255 5426275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5436739 5436822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5443140 5443235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5456807 5456868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 5541948 5542014 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4296 nt):
ATGGCAACCTCCAGAGCATCTTCCCGGTCCCATCGGGACATCACCAATGTGATGCAGAGGCTACAAGATG
AACAAGAGATTGTACAGAAACGTACCTTCACAAAATGGATCAATTCCCATCTGGCCAAGCGGAAGCCTCC
CATGGTGGTGGATGACCTTTTTGAAGACATGAAAGATGGCATCAAGCTGCTTGCTTTACTGGAGGTCCTG
TCTGGGCAGAAACTGCCTTGTGAACAAGGACACCGGGTGAAGCGTATTCATGCTGTGGCTAACATTGGCA
CCGCACTCAAATTCCTTGAAGGAAGGAAGTCCATGTACAGAGGATCACCGATTAAATTAGTCAACATTAA
TGCTACTGATATTGCTGATGGCCGACCATCAATCGTTCTTGGGCTGATGTGGACCATTATCCTGTATTTC
CAGATAGAAGAGTTGACCAGCAACCTACCACAGCTGCAGTCTCTATCCAGCAGTGCTTCCTCTGTGGACA
GCATGGTCAGCACCGAGACTGCCAGCCCACCCAGCAAACGAAAGGTGGCTGCCAAGATCCAGGGAAATGC
CAAGAAAACTCTATTAAAGTGGGTCCAGCACACAGCAGGCAAGCAGATGGGAATAGAAGTGAAAGACTTC
GGGAAGAGTTGGAGAACTGGGTTGGCCTTTCATTCAGTCATCCACGCTATCCAGCCTGAGCTGGTGGACC
TGGAGAAGGTGAAGACTAGATCTAACAGGGAAAACCTGGAGGACGCCTTCACGATCGCTGAAACACAGCT
AGGCATCCCCAGACTGCTTGATCCCGAAGATGTGGATGTGGACAAGCCAGATGAAAAGTCTATCATGACT
TACGTGGCCCAGTTTCTAACACAATACCCTGACATTCATGGTGCAGGCTGTGATGGGCAAGAGGATGATA
GGGATGACAGACTAATTTTGAAGGAAACAAAAGTTTGGATAGAACAATTTGAGAGAGATTTTACAAGGGC
ACAGATGACCGAATCAAGTCTGCAGGACAAATATCAGGCATTTAAGCACTTCAGAGTTCAATATGAAATG
AAAAGGAAACAAGTGGAGCATATAATACAGCCATTGCAAAGAGATGGCAAACTGACGCTCGACCAAGCCT
TGGTCAAGCAGTGCTGGGAGAGAGTATCATCCCGGCTCTTCGATTGGCATATACAGCTGGATAAATCTCT
CCCTGCACCTCTGGGCACTATAGGTGCTTGGCTATACAGGGCAGAAGTGGCCCTGAGAGAAGAGATCACC
ATTCAGCAGGTTCACGAGGAGACAGCAAACACAATCCAACGGAAACTTGAGCAACATAAGGATCTGCTTC
AAAATACAGATGCCCACAAAAGGGCGTTCCATGAAATCTACCAGACCAGGTCTGTCAATGGGATCCCGAT
GCCTCCTGATCAGCTAGAGGACATGGCTGAGAGGTTTCATTTTGTGTCCTCCACATCCGAGCTGCACTTA
ATGAAAATGGAGTTTCTCGAACTGAAGTACCGTCTGCTGTCCCTGCTGGTCCTCGCTGAGTCAAAGCTGA
AGTCCTGGATCATCAAGTATGGGAGGCGAGAGTCTGTGGAGCTGCTGCTGCAAAGCTATATCTCTTTTAT
AGAAAACAGCAAGTTCTTTGAACAGTATGAAGTGACATACCAGATCCTGAAACAGACAGCTGACATATAC
GTCAAAGCAGAGGGCTCAGTGGAGGAAGCTGAGAACGTGATGAAATTCATGAGTGAAGCCACTGCCCAGT
GGAGGAACCTCTCCGTGGAAGTGCGGAGTGTACGGAGCATGCTGGAGGAGGTGATCTCCAACTGGGATCG
CTATGGTGATACCGTGGCTAGTCTCCAAGCCTGGCTAGAAGATGCAGAGAAAATGCTAAGCCAATCAGAA
CATGCCAAGAAGGATTTTTTTCGAAATCTGCCTCACTGGATTCAGCAGCACACAGCCATGAACGATGCCG
GGAATTTCCTGATTGAAACCTGTGATGAGATTGTTTCTCGAGACCTTAAACAGCAGTTGCTCTTATTGAA
CGGTCGATGGAGGGAGCTCTTCATGGAAGTCAAGCAATATGCAAGAGCAGACGAGATGGACAGAATGAAG
AAAGAGTATATAGACGTCACTACCACCCTCTTTGGTTTTGCAACTGAAGCCCACAGGAAACTCTCTGAGC
CTTTAGAAGTCTCTTTTATCAATGTCAAGTTATTAATTCAAGACTTGGAGGATCTGGAGAAGAGGGTGCC
TGTGATGGATGCTCAGTACAAGATGATTGCCAAGAAGGCACATCTCTTTGCCAAAGAAAGTCCCCAAGAA
GAAGCGAATGAAATGCTTACAACCATGTCCAAGCTCAAAGAACAGCTCTCCAAGGTCAAAGAATGTTGCT
CCCCACTGTTGTACGAGGCCCAGCAACTGACGGTTCCTTTGGAAGAACTGGAGACGCAAATCACGTCCTT
CTATGACTCCCTTGGAAAAATCAATGAGATTCTATCAGTTCTTGAGCAAGAAGCACAATCTAGCACTCTT
TTTAAGCAAAAACACCAGGAACTGTTAGCTTCTCAAGAGAACTGTAAGAAATCCTTGACACTCATAGAGA
AGGGCAGCCAAAGTGTTCAGAAGCTGGTGACCTCGAGCCAGGCACGAAAGCCCTGGGATCACACAAAACT
GCAGAAGCAGATAGCAGATGTCCATCATGCATTCCAGAGCATGATCAAGAAAACTGGAGACTGGAAGAAG
CACGTGGAAGCCAACAGCCGTTTGATGAAGAAATTTGAGGAGTCTCGGGCCGAGTTGGAGAAGGTGCTTA
GGGTTGCTCAGGAGGGCCTAGAGGAGAAGGGGGACCCCGAGGAACTCCTTCGGAGACACACGGAGTTCTT
CAGCCAACTGGACCAGAGGGTCCTCAATGCTTTCCTAAAAGCCTGTGATGAGCTAACTGACATCCTCCCA
GAGCAGGAGCAACAAGGCCTACAGGAGGCTGTTCGAAAGCTACACAAACAGTGGAAGGATCTTCAGGGAG
AAGCGCCTTATCATTTGCTCCATCTGAAAATCGCTGTGGAGAAAGACAGATTCTCAGCTGCTGTGGAAGA
GTGCAGAGCTGAGCTGGAGCAAGAGACCAAGCTGGCTCCTCAAGAAGGCAGCGAGAAGATCATAAAGGAA
CACAGGGTTTTCTTCAGTGACAAGGGTCCTCACCATCTCTGTGAGAAGAGACTACAGCTCATAGAGGAAT
TGTGTGGGAAACTCCCCGTCCAGGACCCAGTAAGGGACACATGTGGAGCCTGTCACACAGCTCTCAAAGA
GCTCAAAGCTTCCATTGACAACACTTACACAATGCTCGTGGATGACCCAGACAAGTGGAAGGACTATACC
AGCAGGTTTTCTGAGTTCTCCTCTTGGGTGTCTGCAAAGAAGGCATGTTTGAAGAAAATCAAGGATGAGC
CCATTGACACTGGCAACCACGACGAGGTTAAGCATATGGTGGATGAGATCAGAAATGACATTACCAAGAA
AGGAGAGAGTCTCAGCTGGCTGAAATCCAGGCTTAAGTATTTGATTGATATTTCTTCAGAGAATGAAGCC
CAAAAGCGAGGAGATGAGCTGGCAGAATTATCAAGCTCTTTCAAGGCTCTTGTGGCATTACTGTCAGAGG
TCGAAAAGCTTCTAAGCAACTTTGGAGAATGCGTTCAGTACAAGGAAATCGTGAAAAGTTCCCTTGAGGG
GTTGATATCGGGCCCCCAAGAAAGCAAGGAAGAGGCTGAGATGATCCTGGACTCGAAAAATCTGCTTGAG
GCACAGCAGTTGCTCCTGCATCACCAGCAAAAGACAAAGATGATCTCAGCAAAGAAGAGAGACCTCCAGG
AGCAGATGGAGCAGGCACAGCAGGGTGGGCAGGCAGGCCCAGGTCAAGAGGAGCTGCGGAAGCTGGAGAG
CACCCTCACAGGCCTGGAGCAGAGCAGGGAGAGGCAGGAACGTCGCATCCAGGTCAGCTTGAGGAAATGG
GAGCGGTTTGAGACAAACAAGGAGACGGTGGTCAGATATCTTTTCCAGACAGGTTCCAGCCACGAACGCT
TCTTGAGCTTCAGCAGTTTGGAAAGCCTGTCATCAGAGTTGGAGCAGACAAAGGAGTTTTCTAAGAGGAC
GGAAAGCATTGCCACCCAGGCTGAGAACCTGGTCAAGGAAGCCGCAGAGTTGCCGCTGGGGCCCAGGAAT
AAGCGTGTGCTTCAGCGGCAGGCCAAGTCAATCAAGGAGCAGGTCACAACCCTGGAAGACACGCTTGAAG
AAGAGTATGTGCTTCACCACTTCTAA

Translation (1431 aa):
MATSRASSRSHRDITNVMQRLQDEQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGIKLLALLEVL
SGQKLPCEQGHRVKRIHAVANIGTALKFLEGRKSMYRGSPIKLVNINATDIADGRPSIVLGLMWTIILYF
QIEELTSNLPQLQSLSSSASSVDSMVSTETASPPSKRKVAAKIQGNAKKTLLKWVQHTAGKQMGIEVKDF
GKSWRTGLAFHSVIHAIQPELVDLEKVKTRSNRENLEDAFTIAETQLGIPRLLDPEDVDVDKPDEKSIMT
YVAQFLTQYPDIHGAGCDGQEDDRDDRLILKETKVWIEQFERDFTRAQMTESSLQDKYQAFKHFRVQYEM
KRKQVEHIIQPLQRDGKLTLDQALVKQCWERVSSRLFDWHIQLDKSLPAPLGTIGAWLYRAEVALREEIT
IQQVHEETANTIQRKLEQHKDLLQNTDAHKRAFHEIYQTRSVNGIPMPPDQLEDMAERFHFVSSTSELHL
MKMEFLELKYRLLSLLVLAESKLKSWIIKYGRRESVELLLQSYISFIENSKFFEQYEVTYQILKQTADIY
VKAEGSVEEAENVMKFMSEATAQWRNLSVEVRSVRSMLEEVISNWDRYGDTVASLQAWLEDAEKMLSQSE
HAKKDFFRNLPHWIQQHTAMNDAGNFLIETCDEIVSRDLKQQLLLLNGRWRELFMEVKQYARADEMDRMK
KEYIDVTTTLFGFATEAHRKLSEPLEVSFINVKLLIQDLEDLEKRVPVMDAQYKMIAKKAHLFAKESPQE
EANEMLTTMSKLKEQLSKVKECCSPLLYEAQQLTVPLEELETQITSFYDSLGKINEILSVLEQEAQSSTL
FKQKHQELLASQENCKKSLTLIEKGSQSVQKLVTSSQARKPWDHTKLQKQIADVHHAFQSMIKKTGDWKK
HVEANSRLMKKFEESRAELEKVLRVAQEGLEEKGDPEELLRRHTEFFSQLDQRVLNAFLKACDELTDILP
EQEQQGLQEAVRKLHKQWKDLQGEAPYHLLHLKIAVEKDRFSAAVEECRAELEQETKLAPQEGSEKIIKE
HRVFFSDKGPHHLCEKRLQLIEELCGKLPVQDPVRDTCGACHTALKELKASIDNTYTMLVDDPDKWKDYT
SRFSEFSSWVSAKKACLKKIKDEPIDTGNHDEVKHMVDEIRNDITKKGESLSWLKSRLKYLIDISSENEA
QKRGDELAELSSSFKALVALLSEVEKLLSNFGECVQYKEIVKSSLEGLISGPQESKEEAEMILDSKNLLE
AQQLLLHHQQKTKMISAKKRDLQEQMEQAQQGGQAGPGQEELRKLESTLTGLEQSRERQERRIQVSLRKW
ERFETNKETVVRYLFQTGSSHERFLSFSSLESLSSELEQTKEFSKRTESIATQAENLVKEAAELPLGPRN
KRVLQRQAKSIKEQVTTLEDTLEEEYVLHHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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