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Report for CCDS52770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52770.1 Public Mus musculus 9 Robo3 23 108 98 CCDS HistoryNCBI Gene:19649Re-query CCDS DB by CCDS ID:52770.1Re-query CCDS DB by GeneID:19649See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115038.2 ENSMUSP00000110690.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115038.2Link to Ensembl Protein Viewer:ENSMUSP00000110690.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000115038Re-query CCDS DB by Protein ID:ENSMUSP00000110690
Original member Current member NCBI NM_001164767.1 NP_001158239.1 Accepted alive Link to Nucleotide Sequence:NM_001164767.1Link to Protein Sequence:NP_001158239.1Re-query CCDS DB by Nucleotide ID:NM_001164767Re-query CCDS DB by Protein ID:NP_001158239Link to BLAST:NP_001158239.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158239.1 1402 Q9Z2I4-3 1402 100% 0 0

Chromosomal Locations for CCDS 52770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 37416388 37416399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37416697 37416920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37417326 37417502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37417691 37417801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37417919 37418070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37418486 37418698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37418840 37418978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37419118 37419312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37419669 37419808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37420017 37420059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37420138 37420161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37420888 37421073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37421406 37421577 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37421819 37421940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37422115 37422340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37422530 37422651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37423182 37423348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37423890 37424055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37424327 37424408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37424633 37424838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37425207 37425378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37427026 37427150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37427378 37427505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37427755 37427893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37427990 37428110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37429035 37429192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37429488 37429814 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 37432842 37433001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4209 nt):
ATGCTGCGCTACCTGCTTAAAACACTACTACAGATGAACTTGTTCGCGGACTCCCTGGCCAGGGACATCT
CCAACTCCAGCGAGCTACTCTTCGGCTTCAACTCCTCGCTGGCAGCGCTCAACCCTAGTCTGCTTCCTCC
TGGAGATCCCTCTCTCAATGGGTCAAGAGTTGGGCCAGAAGATGCCATGCCACGCATCGTGGAGCAGCCG
CCAGATCTGGTGGTTTCCAGGGGCGAGCCGGCTACTCTGCCCTGTCGTGCAGAAGGCCGGCCTCGACCCA
ACATCGAGTGGTACAAGAATGGGGCGCGTGTGGCGACTGCACGGGAGGATCCGCGTGCTCACCGTCTGCT
GCTGCCCAGCGGCGCCCTCTTCTTTCCCCGCATTGTGCACGGGCGTCGCTCTCGGCCTGACGAGGGTGTC
TACACCTGTGTGGCTCGCAACTACCTGGGAGCAGCGGCTAGCAGAAACGCCTCTCTGGAAGTAGCTGTCC
TCCGTGATGATTTCCGGCAATCGCCTGGGAACGTGGTGGTAGCGGTGGGGGAGCCAGCTGTAATGGAATG
TGTGCCCCCTAAGGGTCACCCAGAGCCTTTGGTGACCTGGAAGAAAGGCAAAATAAAGCTTAAGGAAGAG
GAGGGAAGGATCACCATACGTGGAGGAAAGCTGATGATGTCACACACGTTCAAGAGTGATGCTGGCATGT
ATATGTGCGTAGCCTCCAACATGGCTGGAGAACGAGAGAGTGGGGCAGCTGAACTTGTGGTACTGGAGCG
TCCCTCATTTCTGCGTAGACCAATAAACCAGGTTGTCCTGGCTGATGCCCCTGTGAATTTCCTGTGTGAG
GTGCAGGGAGATCCCCAGCCCAATCTACACTGGCGCAAGGATGATGGGGAGCTGCCCGCGGGCAGGTATG
AGATTCGGAGTGACCACAGCCTTTGGATCGACCAAGTGAGCTCTGAAGACGAGGGGACGTACACGTGTGT
AGCAGAGAACAGTGTGGGCCGCGCAGAGGCATCTGGCTCCCTCAGTGTTCACGTCCCACCACAATTTGTG
ACTAAGCCCCAGAACCAGACAGTAGCTCCCGGAGCAAACGTGTCATTCCAATGTGAGACCAAAGGAAACC
CTCCACCTGCCATCTTCTGGCAGAAGGAAGGGAGTCAAGTCCTGCTTTTCCCTAGTCAGTCACTCCAACC
CATGGGACGCCTCTTAGTCTCTCCAAGAGGCCAGCTCAACATCACTGAAGTAAAGATCGGGGATGGTGGC
TACTACGTGTGCCAGGCTGTCAGTGTGGCTGGTAGCATCCTAGCAAAGGCCCTATTAGAGATAAAAGGCG
CCTCCATAGATGGGCTACCTCCCATCATTCTCCAGGGACCAGCCAATCAGACACTGGTACTTGGCTCTTC
TGTGTGGCTGCCATGCAGAGTGATTGGAAACCCCCAGCCCAACATCCAGTGGAAGAAGGATGAGAGGTGG
CTGCAGGGGGATGACTCACAGTTCAACTTAATGGACAATGGCACTCTACACATTGCCAGCATACAGGAGA
TGGACATGGGTTTCTACAGCTGTGTGGCCAAGAGTTCCATAGGGGAGGCCACATGGAATAGCTGGCTTAG
GAAGCAAGAAGATTGGGGAGCATCACCAGGTCCAGCAACAGGACCCAGTAATCCTCCAGGGCCTCCCTCT
CAGCCAATAGTCACAGAGGTAACCGCAAACAGCATTACCTTGACCTGGAAGCCCAATCCACAGTCTGGGG
CCACAGCTACCTCCTATGTGATAGAGGCCTTCAGCCAAGCAGCTGGCAACACGTGGCGGACGGTGGCCGA
TGGGGTGCAGCTGGAAACTTACACCATCAGTGGCCTGCAGCCCAACACCATCTACTTATTCCTAGTGAGA
GCAGTTGGAGCCTGGGGCCTCAGTGAACCCAGTCCTGTCTCTGAGCCTGTTCAAACCCAGGACAGCAGCC
TATCTAGGCCAGCGGAGGACCCGTGGAAAGGCCAGCGAGGGCTAGCGGAAGTGGCCGTGCGAATGCAGGA
GCCCACTGTCCTTGGGCCCAGAACTCTGCAGGTTTCCTGGACTGTGGATGGTCCAGTCCAGCTGGTGCAA
GGATTCCGTGTGTCTTGGAGGATTGCAGGCCTTGACCAGGGAAGCTGGACAATGCTAGACCTACAGAGTC
CACACAAGCAAAGTACTGTGCTAAGAGGACTGCCCCCAGGGGCCCAAATCCAGATCAAGGTGCAAGTCCA
AGGCCAGGAGGGGCTGGGGGCTGAAAGCCCTTTTGTGACCAGGAGCATTCCTGAGGAGGCCCCCAGTGGC
CCCCCTCAGGGAGTGGCTGTGGCCTTGGGGGGTGATCGCAACAGCAGTGTCACTGTATCCTGGGAGCCTC
CACTTCCCTCCCAGCGAAATGGGGTCATCACTGAATACCAGATTTGGTGCCTGGGTAATGAAAGCCGATT
CCACCTCAATCGATCTGCAGCAGGTTGGGCACGCTCTGTGACGTTCAGCGGACTGCTACCAGGCCAGATC
TATCGAGCCTTGGTGGCAGCAGCTACCAGTGCTGGCGTGGGCGTGGCCAGTGCTCCAGTGCTAGTGCAGC
TGCCATTCCCTCCGGCGGCGGAGCCGGGGCCTGAGGTCAGCGAGGGGCTGGCAGAACGGTTGGCTAAGGT
GCTGCGGAAGCCTGCTTTCCTAGCTGGCAGCAGCGCAGCCTGCGGGGCGCTGCTACTCGGGTTCTGCGCC
GCCCTCTACCGGCGTCAGAAGCAGCGCAAAGAACTCAGTCACTATACGGCCTCCTTTGCCTACACACCTG
CAGTGTCCTTTCCACACTCAGAGGGCCTTTCTGGATCCAGTTCCAGGCCACCCATGGGCCTTGGCCCTGC
TGCCTACCCATGGCTGGCAGACTCCTGGCCCCACCCACCTCGGAGTCCCTCAGCTCAGGAGCCCCGGGGG
AGCTGCTGCCCCAGCAATCCTGATCCAGATGATAGATACTACAATGAGGCAGGAATCTCCCTGTACTTGG
CTCAGACTGCACGTGGTGCTAATGCCTCTGGTGAGGGTCCTGTCTACAGCACCATTGACCCAGTAGGGGA
AGAGCTACAGACCTTCCACGGAGGGTTCCCTCAACACTCTTCTGGGGACCCAAGCACCTGGAGCCAGTAT
GCTCCCCCGGAATGGAGCGAGGGGGACAGTGGAGCCAGGGGAGGCCAGGGGAAGCTTCTGGGCAAGCCTG
TACAAATGCCATCTTTGAGCTGGCCAGAAGCCCTGCCACCGCCTCCCCCTTCCTGTGAGCTGAGCTGTCC
GGAGGGGCCTGAGGAGGAGCTGAAGGGCAGTTCAGATCTGGAAGAGTGGTGCCCACCAGTGCCTGAGAAA
AGCCACTTGGTTGGGTCAAGCTCCAGTGGTGCGTGCATGGTGGCTCCAGCCCCAAGGGACACACCCTCCC
CCACTTCTTCTTATGGACAGCAGTCCACAGCTACTCTTACCCCCTCACCTCCTGATCCTCCCCAACCCCC
TACTGACATCCCACATCTCCATCAGATGCCCAGGAGAGTACCCCTCGGGCCAAGTTCTCCTCTCAGCGTA
TCCCAGCCCGCTCTGAGTAGCCATGACGGACGGCCTGTTGGCCTGGGTGCTGGCCCCGTACTCTCCTATC
ACGCTAGCCCCAGTCCTGTCCCTAGTACAGCCAGCAGTGCACCGGGGAGAACCCGTCAGGTAACTGGAGA
GATGACTCCCCCACTCCATGGACACCGTGCTCGAATCCGGAAGAAACCCAAGGCTCTTCCCTACAGAAGG
GAGCACAGTCCCGGGGACTTGCCCCCACCACCCTTGCCACCACCAGAGGAAGAGACAAGCTGGCCCTTGG
GTCTGCGGGCAGCAGGCAGCATGTCTTCCCTAGAGCGAGAGCGCAGTGGGGAGAGGAGAGTGGTGCAGGC
AGTGCCTCTAGGGGCCCAACCTCTAGGGGCCCAACGTGGGCCCCACCCAGATGCTGCACTTCTGGGTTGT
GCTGCGGAAGAGGCCTGGCTTCCATACGGCAGACCAAGCTTCCTGAGCCATGGCCAGGGCACCAGCACCT
GCTCTACCGCTGGTAGCAATTCTTCTAGGGGTTCCAACAGCTCTCGAGGTTCTCGGGGCTCTCGGGGCCC
TGGACGCAGCCGAAGTCGAAGCCGGAGCCAGAGCCAGAGCCAGAGGCCAGGACGGAATCGCCGAGAGGAA
CCAAGATGA

Translation (1402 aa):
MLRYLLKTLLQMNLFADSLARDISNSSELLFGFNSSLAALNPSLLPPGDPSLNGSRVGPEDAMPRIVEQP
PDLVVSRGEPATLPCRAEGRPRPNIEWYKNGARVATAREDPRAHRLLLPSGALFFPRIVHGRRSRPDEGV
YTCVARNYLGAAASRNASLEVAVLRDDFRQSPGNVVVAVGEPAVMECVPPKGHPEPLVTWKKGKIKLKEE
EGRITIRGGKLMMSHTFKSDAGMYMCVASNMAGERESGAAELVVLERPSFLRRPINQVVLADAPVNFLCE
VQGDPQPNLHWRKDDGELPAGRYEIRSDHSLWIDQVSSEDEGTYTCVAENSVGRAEASGSLSVHVPPQFV
TKPQNQTVAPGANVSFQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPMGRLLVSPRGQLNITEVKIGDGG
YYVCQAVSVAGSILAKALLEIKGASIDGLPPIILQGPANQTLVLGSSVWLPCRVIGNPQPNIQWKKDERW
LQGDDSQFNLMDNGTLHIASIQEMDMGFYSCVAKSSIGEATWNSWLRKQEDWGASPGPATGPSNPPGPPS
QPIVTEVTANSITLTWKPNPQSGATATSYVIEAFSQAAGNTWRTVADGVQLETYTISGLQPNTIYLFLVR
AVGAWGLSEPSPVSEPVQTQDSSLSRPAEDPWKGQRGLAEVAVRMQEPTVLGPRTLQVSWTVDGPVQLVQ
GFRVSWRIAGLDQGSWTMLDLQSPHKQSTVLRGLPPGAQIQIKVQVQGQEGLGAESPFVTRSIPEEAPSG
PPQGVAVALGGDRNSSVTVSWEPPLPSQRNGVITEYQIWCLGNESRFHLNRSAAGWARSVTFSGLLPGQI
YRALVAAATSAGVGVASAPVLVQLPFPPAAEPGPEVSEGLAERLAKVLRKPAFLAGSSAACGALLLGFCA
ALYRRQKQRKELSHYTASFAYTPAVSFPHSEGLSGSSSRPPMGLGPAAYPWLADSWPHPPRSPSAQEPRG
SCCPSNPDPDDRYYNEAGISLYLAQTARGANASGEGPVYSTIDPVGEELQTFHGGFPQHSSGDPSTWSQY
APPEWSEGDSGARGGQGKLLGKPVQMPSLSWPEALPPPPPSCELSCPEGPEEELKGSSDLEEWCPPVPEK
SHLVGSSSSGACMVAPAPRDTPSPTSSYGQQSTATLTPSPPDPPQPPTDIPHLHQMPRRVPLGPSSPLSV
SQPALSSHDGRPVGLGAGPVLSYHASPSPVPSTASSAPGRTRQVTGEMTPPLHGHRARIRKKPKALPYRR
EHSPGDLPPPPLPPPEEETSWPLGLRAAGSMSSLERERSGERRVVQAVPLGAQPLGAQRGPHPDAALLGC
AAEEAWLPYGRPSFLSHGQGTSTCSTAGSNSSRGSNSSRGSRGSRGPGRSRSRSRSQSQSQRPGRNRREE
PR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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