CCDS Home FTP Process Releases & Statistics
Collaborators EBI HGNC MGI NCBI
Contact Us email CCDS
Genome Displays Related Resources Gene HomoloGene MANE RefSeq
|
|
Report for CCDS52770.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
52770.1 |
Public |
Mus musculus |
9 |
Robo3 |
23 |
108 |
98 |
|
Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 52770.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
Status in CCDS |
Seq. Status |
Links |
---|
|
|
EBI |
ENSMUST00000115038.2 |
ENSMUSP00000110690.1 |
Accepted |
alive |
|
|
|
NCBI |
NM_001164767.1 |
NP_001158239.1 |
Accepted |
alive |
|
RefSeq |
Length |
Related UniProtKB/SwissProt |
Length |
Identity |
Gaps |
Mismatches |
NP_001158239.1 |
1402 |
Q9Z2I4-3 |
1402 |
100% |
0 |
0 |
Chromosomal Locations for CCDS 52770.1
Assembly GRCm38.p6 (GCF_000001635.26)
CCDS Sequence Data |
---|
Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (4209 nt): ATGCTGCGCTACCTGCTTAAAACACTACTACAGATGAACTTGTTCGCGGACTCCCTGGCCAGGGACATCT CCAACTCCAGCGAGCTACTCTTCGGCTTCAACTCCTCGCTGGCAGCGCTCAACCCTAGTCTGCTTCCTCC TGGAGATCCCTCTCTCAATGGGTCAAGAGTTGGGCCAGAAGATGCCATGCCACGCATCGTGGAGCAGCCG CCAGATCTGGTGGTTTCCAGGGGCGAGCCGGCTACTCTGCCCTGTCGTGCAGAAGGCCGGCCTCGACCCA ACATCGAGTGGTACAAGAATGGGGCGCGTGTGGCGACTGCACGGGAGGATCCGCGTGCTCACCGTCTGCT GCTGCCCAGCGGCGCCCTCTTCTTTCCCCGCATTGTGCACGGGCGTCGCTCTCGGCCTGACGAGGGTGTC TACACCTGTGTGGCTCGCAACTACCTGGGAGCAGCGGCTAGCAGAAACGCCTCTCTGGAAGTAGCTGTCC TCCGTGATGATTTCCGGCAATCGCCTGGGAACGTGGTGGTAGCGGTGGGGGAGCCAGCTGTAATGGAATG TGTGCCCCCTAAGGGTCACCCAGAGCCTTTGGTGACCTGGAAGAAAGGCAAAATAAAGCTTAAGGAAGAG GAGGGAAGGATCACCATACGTGGAGGAAAGCTGATGATGTCACACACGTTCAAGAGTGATGCTGGCATGT ATATGTGCGTAGCCTCCAACATGGCTGGAGAACGAGAGAGTGGGGCAGCTGAACTTGTGGTACTGGAGCG TCCCTCATTTCTGCGTAGACCAATAAACCAGGTTGTCCTGGCTGATGCCCCTGTGAATTTCCTGTGTGAG GTGCAGGGAGATCCCCAGCCCAATCTACACTGGCGCAAGGATGATGGGGAGCTGCCCGCGGGCAGGTATG AGATTCGGAGTGACCACAGCCTTTGGATCGACCAAGTGAGCTCTGAAGACGAGGGGACGTACACGTGTGT AGCAGAGAACAGTGTGGGCCGCGCAGAGGCATCTGGCTCCCTCAGTGTTCACGTCCCACCACAATTTGTG ACTAAGCCCCAGAACCAGACAGTAGCTCCCGGAGCAAACGTGTCATTCCAATGTGAGACCAAAGGAAACC CTCCACCTGCCATCTTCTGGCAGAAGGAAGGGAGTCAAGTCCTGCTTTTCCCTAGTCAGTCACTCCAACC CATGGGACGCCTCTTAGTCTCTCCAAGAGGCCAGCTCAACATCACTGAAGTAAAGATCGGGGATGGTGGC TACTACGTGTGCCAGGCTGTCAGTGTGGCTGGTAGCATCCTAGCAAAGGCCCTATTAGAGATAAAAGGCG CCTCCATAGATGGGCTACCTCCCATCATTCTCCAGGGACCAGCCAATCAGACACTGGTACTTGGCTCTTC TGTGTGGCTGCCATGCAGAGTGATTGGAAACCCCCAGCCCAACATCCAGTGGAAGAAGGATGAGAGGTGG CTGCAGGGGGATGACTCACAGTTCAACTTAATGGACAATGGCACTCTACACATTGCCAGCATACAGGAGA TGGACATGGGTTTCTACAGCTGTGTGGCCAAGAGTTCCATAGGGGAGGCCACATGGAATAGCTGGCTTAG GAAGCAAGAAGATTGGGGAGCATCACCAGGTCCAGCAACAGGACCCAGTAATCCTCCAGGGCCTCCCTCT CAGCCAATAGTCACAGAGGTAACCGCAAACAGCATTACCTTGACCTGGAAGCCCAATCCACAGTCTGGGG CCACAGCTACCTCCTATGTGATAGAGGCCTTCAGCCAAGCAGCTGGCAACACGTGGCGGACGGTGGCCGA TGGGGTGCAGCTGGAAACTTACACCATCAGTGGCCTGCAGCCCAACACCATCTACTTATTCCTAGTGAGA GCAGTTGGAGCCTGGGGCCTCAGTGAACCCAGTCCTGTCTCTGAGCCTGTTCAAACCCAGGACAGCAGCC TATCTAGGCCAGCGGAGGACCCGTGGAAAGGCCAGCGAGGGCTAGCGGAAGTGGCCGTGCGAATGCAGGA GCCCACTGTCCTTGGGCCCAGAACTCTGCAGGTTTCCTGGACTGTGGATGGTCCAGTCCAGCTGGTGCAA GGATTCCGTGTGTCTTGGAGGATTGCAGGCCTTGACCAGGGAAGCTGGACAATGCTAGACCTACAGAGTC CACACAAGCAAAGTACTGTGCTAAGAGGACTGCCCCCAGGGGCCCAAATCCAGATCAAGGTGCAAGTCCA AGGCCAGGAGGGGCTGGGGGCTGAAAGCCCTTTTGTGACCAGGAGCATTCCTGAGGAGGCCCCCAGTGGC CCCCCTCAGGGAGTGGCTGTGGCCTTGGGGGGTGATCGCAACAGCAGTGTCACTGTATCCTGGGAGCCTC CACTTCCCTCCCAGCGAAATGGGGTCATCACTGAATACCAGATTTGGTGCCTGGGTAATGAAAGCCGATT CCACCTCAATCGATCTGCAGCAGGTTGGGCACGCTCTGTGACGTTCAGCGGACTGCTACCAGGCCAGATC TATCGAGCCTTGGTGGCAGCAGCTACCAGTGCTGGCGTGGGCGTGGCCAGTGCTCCAGTGCTAGTGCAGC TGCCATTCCCTCCGGCGGCGGAGCCGGGGCCTGAGGTCAGCGAGGGGCTGGCAGAACGGTTGGCTAAGGT GCTGCGGAAGCCTGCTTTCCTAGCTGGCAGCAGCGCAGCCTGCGGGGCGCTGCTACTCGGGTTCTGCGCC GCCCTCTACCGGCGTCAGAAGCAGCGCAAAGAACTCAGTCACTATACGGCCTCCTTTGCCTACACACCTG CAGTGTCCTTTCCACACTCAGAGGGCCTTTCTGGATCCAGTTCCAGGCCACCCATGGGCCTTGGCCCTGC TGCCTACCCATGGCTGGCAGACTCCTGGCCCCACCCACCTCGGAGTCCCTCAGCTCAGGAGCCCCGGGGG AGCTGCTGCCCCAGCAATCCTGATCCAGATGATAGATACTACAATGAGGCAGGAATCTCCCTGTACTTGG CTCAGACTGCACGTGGTGCTAATGCCTCTGGTGAGGGTCCTGTCTACAGCACCATTGACCCAGTAGGGGA AGAGCTACAGACCTTCCACGGAGGGTTCCCTCAACACTCTTCTGGGGACCCAAGCACCTGGAGCCAGTAT GCTCCCCCGGAATGGAGCGAGGGGGACAGTGGAGCCAGGGGAGGCCAGGGGAAGCTTCTGGGCAAGCCTG TACAAATGCCATCTTTGAGCTGGCCAGAAGCCCTGCCACCGCCTCCCCCTTCCTGTGAGCTGAGCTGTCC GGAGGGGCCTGAGGAGGAGCTGAAGGGCAGTTCAGATCTGGAAGAGTGGTGCCCACCAGTGCCTGAGAAA AGCCACTTGGTTGGGTCAAGCTCCAGTGGTGCGTGCATGGTGGCTCCAGCCCCAAGGGACACACCCTCCC CCACTTCTTCTTATGGACAGCAGTCCACAGCTACTCTTACCCCCTCACCTCCTGATCCTCCCCAACCCCC TACTGACATCCCACATCTCCATCAGATGCCCAGGAGAGTACCCCTCGGGCCAAGTTCTCCTCTCAGCGTA TCCCAGCCCGCTCTGAGTAGCCATGACGGACGGCCTGTTGGCCTGGGTGCTGGCCCCGTACTCTCCTATC ACGCTAGCCCCAGTCCTGTCCCTAGTACAGCCAGCAGTGCACCGGGGAGAACCCGTCAGGTAACTGGAGA GATGACTCCCCCACTCCATGGACACCGTGCTCGAATCCGGAAGAAACCCAAGGCTCTTCCCTACAGAAGG GAGCACAGTCCCGGGGACTTGCCCCCACCACCCTTGCCACCACCAGAGGAAGAGACAAGCTGGCCCTTGG GTCTGCGGGCAGCAGGCAGCATGTCTTCCCTAGAGCGAGAGCGCAGTGGGGAGAGGAGAGTGGTGCAGGC AGTGCCTCTAGGGGCCCAACCTCTAGGGGCCCAACGTGGGCCCCACCCAGATGCTGCACTTCTGGGTTGT GCTGCGGAAGAGGCCTGGCTTCCATACGGCAGACCAAGCTTCCTGAGCCATGGCCAGGGCACCAGCACCT GCTCTACCGCTGGTAGCAATTCTTCTAGGGGTTCCAACAGCTCTCGAGGTTCTCGGGGCTCTCGGGGCCC TGGACGCAGCCGAAGTCGAAGCCGGAGCCAGAGCCAGAGCCAGAGGCCAGGACGGAATCGCCGAGAGGAA CCAAGATGA
Translation (1402 aa): MLRYLLKTLLQMNLFADSLARDISNSSELLFGFNSSLAALNPSLLPPGDPSLNGSRVGPEDAMPRIVEQP PDLVVSRGEPATLPCRAEGRPRPNIEWYKNGARVATAREDPRAHRLLLPSGALFFPRIVHGRRSRPDEGV YTCVARNYLGAAASRNASLEVAVLRDDFRQSPGNVVVAVGEPAVMECVPPKGHPEPLVTWKKGKIKLKEE EGRITIRGGKLMMSHTFKSDAGMYMCVASNMAGERESGAAELVVLERPSFLRRPINQVVLADAPVNFLCE VQGDPQPNLHWRKDDGELPAGRYEIRSDHSLWIDQVSSEDEGTYTCVAENSVGRAEASGSLSVHVPPQFV TKPQNQTVAPGANVSFQCETKGNPPPAIFWQKEGSQVLLFPSQSLQPMGRLLVSPRGQLNITEVKIGDGG YYVCQAVSVAGSILAKALLEIKGASIDGLPPIILQGPANQTLVLGSSVWLPCRVIGNPQPNIQWKKDERW LQGDDSQFNLMDNGTLHIASIQEMDMGFYSCVAKSSIGEATWNSWLRKQEDWGASPGPATGPSNPPGPPS QPIVTEVTANSITLTWKPNPQSGATATSYVIEAFSQAAGNTWRTVADGVQLETYTISGLQPNTIYLFLVR AVGAWGLSEPSPVSEPVQTQDSSLSRPAEDPWKGQRGLAEVAVRMQEPTVLGPRTLQVSWTVDGPVQLVQ GFRVSWRIAGLDQGSWTMLDLQSPHKQSTVLRGLPPGAQIQIKVQVQGQEGLGAESPFVTRSIPEEAPSG PPQGVAVALGGDRNSSVTVSWEPPLPSQRNGVITEYQIWCLGNESRFHLNRSAAGWARSVTFSGLLPGQI YRALVAAATSAGVGVASAPVLVQLPFPPAAEPGPEVSEGLAERLAKVLRKPAFLAGSSAACGALLLGFCA ALYRRQKQRKELSHYTASFAYTPAVSFPHSEGLSGSSSRPPMGLGPAAYPWLADSWPHPPRSPSAQEPRG SCCPSNPDPDDRYYNEAGISLYLAQTARGANASGEGPVYSTIDPVGEELQTFHGGFPQHSSGDPSTWSQY APPEWSEGDSGARGGQGKLLGKPVQMPSLSWPEALPPPPPSCELSCPEGPEEELKGSSDLEEWCPPVPEK SHLVGSSSSGACMVAPAPRDTPSPTSSYGQQSTATLTPSPPDPPQPPTDIPHLHQMPRRVPLGPSSPLSV SQPALSSHDGRPVGLGAGPVLSYHASPSPVPSTASSAPGRTRQVTGEMTPPLHGHRARIRKKPKALPYRR EHSPGDLPPPPLPPPEEETSWPLGLRAAGSMSSLERERSGERRVVQAVPLGAQPLGAQRGPHPDAALLGC AAEEAWLPYGRPSFLSHGQGTSTCSTAGSNSSRGSNSSRGSRGSRGPGRSRSRSRSQSQSQRPGRNRREE PR
|