NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, April 30, 2024, starting at 9:30 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50544.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50544.1 Public Mus musculus 2 Slc2a6 23 108 98 CCDS HistoryNCBI Gene:227659Re-query CCDS DB by CCDS ID:50544.1Re-query CCDS DB by GeneID:227659See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50544.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000102890.10 ENSMUSP00000099954.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000102890.10Link to Ensembl Protein Viewer:ENSMUSP00000099954.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000102890Re-query CCDS DB by Protein ID:ENSMUSP00000099954
Original member Current member NCBI NM_001177627.1 NP_001171098.1 Accepted alive Link to Nucleotide Sequence:NM_001177627.1Link to Protein Sequence:NP_001171098.1Re-query CCDS DB by Nucleotide ID:NM_001177627Re-query CCDS DB by Protein ID:NP_001171098Link to BLAST:NP_001171098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171098.1 443 Q3UDF0-2 443 100% 0 0

Chromosomal Locations for CCDS 50544.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 27021914 27022069 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27022719 27022864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27023535 27023643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27024183 27024335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27024585 27024793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27025223 27025322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27025901 27026107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27027141 27027303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 27027817 27027905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGCAGGAACCCCTGCTAAGAACCGAGGGACTCGACTATGATACCTTCCCCGAGGTGCCCGCGACTCCTG
GAGAGAGAGAACGAGCCGGGGCCTTGAAAAACAGAAGGGTGTTCCTGGCTACCTTCGCCGCTGTGCTGGG
CAATTTCAGCTTTGGGTATGCCTTGGTCTACACATCTCCAGTCATCCCTGAACTGAAGCTCTCTTCTGAC
CCAGCACTACACCTGGACAAAATCCAGGCATCCTGGTTTGGGTCCGTGTTCACCTTGGGTGCCGCAGCAG
GGGGCCTCAGTGCTATGTTACTCAATGACCTCCTGGGCCGGAAGCTCAGCATCATGTTCTCAGCTGTCCC
CTCAGCCATTGGCTATGCAATCATGGCCGGTGCCCGTGGCCTCTGGATGCTTCTGTTGGGGAGGATGCTG
ACGGGCTTTGCCGGGGGACTCACTGCTGCCTGCATCCCGGTGTACGTGTCTGAGATTGCACCCCCTGATG
TTCGTGGGGCCCTGGGGGCCACACCGCAGCTCATGGCCGTGTTTGGATCCCTGTCTCTCTACGCCCTTGG
TCTGCTGCTACCTTGGCGATGGCTTGCTGTGGCTGGAGAGGGGCCGGTTCTCATCATGATCCTGCTGCTC
AGCTTCATGCCCAACTCTCCTCGCTTCTTGCTCTCAAAGAGCCGGGATGAGGAGGCACTGCAGGCGCTGA
CCTGGCTGCGAGCTGACTCCGAGGTCCATTGGGAGTTTGAGCAGATCCAGGACAACGTGCGGAGACAGAG
TAGCCGAGTGTCGTGGGCGGAAGCCCGGGAACCCCGTGTGTACCGGCCTGTTCTCATTGCAGTACTGATG
CGCTTTCTGCAGCAGCTGACAGGCATCACACCCATCCTGGTGTACCTACAGACCATCTTCGACAACACAT
CCGTGGTGCTGCCCTCCCAGCAGGATGCAGCGATAGTTGGTGCTGTGAGGCTCCTATCTGTGCTGATTGC
TGCTGTCACCATGGACCTGGCGGGCCGAAAAGTTCTGCTCTATGTGTCAGGCTATGCCATGGGCTGGGGT
CCCATCACCTGGCTCCTCATGTCTGAGGTTCTGCCCTTGCGTGCCCGTGGTGTGGCCTCAGGGCTCTGCG
TGCTGGTCAGCTGGCTCACAGCCTTCGTCCTCACTAACTACTTCCTGCTGGCAGTGAATGCCTTCGGCCT
CCAGGTGCCTTTCTTCTTCTTCTCGGCCATCTGCCTGCTCAGCTTGCTCTTCACAGGCTGCTGTGTGCCT
GAGACCAGGGGCCGCTCGCTGGAGCAGATCGAGGCCTTCTTCCACACTCGCAGGATGTCCTTCAGGCCCT
AG

Translation (443 aa):
MQEPLLRTEGLDYDTFPEVPATPGERERAGALKNRRVFLATFAAVLGNFSFGYALVYTSPVIPELKLSSD
PALHLDKIQASWFGSVFTLGAAAGGLSAMLLNDLLGRKLSIMFSAVPSAIGYAIMAGARGLWMLLLGRML
TGFAGGLTAACIPVYVSEIAPPDVRGALGATPQLMAVFGSLSLYALGLLLPWRWLAVAGEGPVLIMILLL
SFMPNSPRFLLSKSRDEEALQALTWLRADSEVHWEFEQIQDNVRRQSSRVSWAEAREPRVYRPVLIAVLM
RFLQQLTGITPILVYLQTIFDNTSVVLPSQQDAAIVGAVRLLSVLIAAVTMDLAGRKVLLYVSGYAMGWG
PITWLLMSEVLPLRARGVASGLCVLVSWLTAFVLTNYFLLAVNAFGLQVPFFFFSAICLLSLLFTGCCVP
ETRGRSLEQIEAFFHTRRMSFRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH