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Items: 1 to 20 of 236

1.

Comparative sequence and structural analyses of G-protein-coupled receptor crystal structures and implications for molecular models.

Worth CL, Kleinau G, Krause G.

PLoS One. 2009 Sep 16;4(9):e7011. doi: 10.1371/journal.pone.0007011.

2.

Exploring the structure of opioid receptors with homology modeling based on single and multiple templates and subsequent docking: a comparative study.

Bera I, Laskar A, Ghoshal N.

J Mol Model. 2011 May;17(5):1207-21. doi: 10.1007/s00894-010-0803-8. Epub 2010 Jul 27.

PMID:
20661609
3.

X-ray structure breakthroughs in the GPCR transmembrane region.

Topiol S, Sabio M.

Biochem Pharmacol. 2009 Jul 1;78(1):11-20. doi: 10.1016/j.bcp.2009.02.012. Epub 2009 Feb 27. Review.

PMID:
19447219
4.

GPCR-SSFE: a comprehensive database of G-protein-coupled receptor template predictions and homology models.

Worth CL, Kreuchwig A, Kleinau G, Krause G.

BMC Bioinformatics. 2011 May 23;12:185. doi: 10.1186/1471-2105-12-185.

5.

Relevance of rhodopsin studies for GPCR activation.

Deupi X.

Biochim Biophys Acta. 2014 May;1837(5):674-82. doi: 10.1016/j.bbabio.2013.09.002. Epub 2013 Sep 13. Review.

6.

Modern homology modeling of G-protein coupled receptors: which structural template to use?

Mobarec JC, Sanchez R, Filizola M.

J Med Chem. 2009 Aug 27;52(16):5207-16. doi: 10.1021/jm9005252.

7.

Structure modeling of all identified G protein-coupled receptors in the human genome.

Zhang Y, Devries ME, Skolnick J.

PLoS Comput Biol. 2006 Feb;2(2):e13. Epub 2006 Feb 17. Erratum in: PLoS Comput Biol. 2006 Mar;2(3):e29.

8.

Modelling the structures of G protein-coupled receptors aided by three-dimensional validation.

Dastmalchi S, Church WB, Morris MB.

BMC Bioinformatics. 2008;9 Suppl 1:S14. doi: 10.1186/1471-2105-9-S1-S14.

9.

7TM Domain Structure of Adhesion GPCRs.

de Graaf C, Nijmeijer S, Wolf S, Ernst OP.

Handb Exp Pharmacol. 2016;234:43-66. Review.

PMID:
27832483
10.

Structure and activation of rhodopsin.

Zhou XE, Melcher K, Xu HE.

Acta Pharmacol Sin. 2012 Mar;33(3):291-9. doi: 10.1038/aps.2011.171. Epub 2012 Jan 23. Review.

11.

Quantification of structural distortions in the transmembrane helices of GPCRs.

Deupi X.

Methods Mol Biol. 2012;914:219-35. doi: 10.1007/978-1-62703-023-6_13.

PMID:
22976031
12.

Structure-Based Sequence Alignment of the Transmembrane Domains of All Human GPCRs: Phylogenetic, Structural and Functional Implications.

Cvicek V, Goddard WA 3rd, Abrol R.

PLoS Comput Biol. 2016 Mar 30;12(3):e1004805. doi: 10.1371/journal.pcbi.1004805. eCollection 2016 Mar.

13.

Towards improved quality of GPCR models by usage of multiple templates and profile-profile comparison.

Latek D, Pasznik P, Carlomagno T, Filipek S.

PLoS One. 2013;8(2):e56742. doi: 10.1371/journal.pone.0056742. Epub 2013 Feb 28.

14.

Crystal structure of squid rhodopsin with intracellularly extended cytoplasmic region.

Shimamura T, Hiraki K, Takahashi N, Hori T, Ago H, Masuda K, Takio K, Ishiguro M, Miyano M.

J Biol Chem. 2008 Jun 27;283(26):17753-6. doi: 10.1074/jbc.C800040200. Epub 2008 May 6.

15.

Assessing GPCR homology models constructed from templates of various transmembrane sequence identities: Binding mode prediction and docking enrichment.

Loo JSE, Emtage AL, Ng KW, Yong ASJ, Doughty SW.

J Mol Graph Model. 2018 Mar;80:38-47. doi: 10.1016/j.jmgm.2017.12.017. Epub 2017 Dec 29.

PMID:
29306746
16.

New G-protein-coupled receptor crystal structures: insights and limitations.

Kobilka B, Schertler GF.

Trends Pharmacol Sci. 2008 Feb;29(2):79-83. doi: 10.1016/j.tips.2007.11.009. Epub 2008 Jan 14. Review.

PMID:
18194818
17.

Conserved waters mediate structural and functional activation of family A (rhodopsin-like) G protein-coupled receptors.

Angel TE, Chance MR, Palczewski K.

Proc Natl Acad Sci U S A. 2009 May 26;106(21):8555-60. doi: 10.1073/pnas.0903545106. Epub 2009 May 11.

18.

Homology modeling of G-protein-coupled receptors with X-ray structures on the rise.

Yarnitzky T, Levit A, Niv MY.

Curr Opin Drug Discov Devel. 2010 May;13(3):317-25. Review.

PMID:
20443165
19.

Template selection and refinement considerations for modelling aminergic GPCR-ligand complexes.

Urmi KF, Finch AM, Griffith R.

J Mol Graph Model. 2017 Sep;76:488-503. doi: 10.1016/j.jmgm.2017.07.030. Epub 2017 Jul 31.

PMID:
28818718
20.

G-protein coupled receptor structure.

Yeagle PL, Albert AD.

Biochim Biophys Acta. 2007 Apr;1768(4):808-24. Epub 2006 Oct 10. Review.

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