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Sample GSM448856 Query DataSets for GSM448856
Status Public on Nov 23, 2009
Title small RNA maize seedling tissues
Sample type SRA
Source name Total RNA from maize seedling tissues
Organism Zea mays
Characteristics tissue: seedling
strain: B73
Extracted molecule total RNA
Extraction protocol small RNA libraries contructed from root, seedling, tassel, ear, and pollen
Library strategy miRNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
Description 19-24nt RNA gel-extracted from total RNA in seedling tissue
Data processing Triimmed: solexa sequences were converted to fasta, the adaptor sequence (CTGTAGGCACCATCAAT) was pattern matched and trimmed off. Only sequences were the adaptor was identified (with at least 6nt) is included in this set
Submission date Sep 02, 2009
Last update date May 15, 2019
Contact name Jer-M Chia
Phone (516)367-8810
Fax +1-917-319-7573
Organization name Cold Spring Harbor Laboratory
Lab Ware Lab
Street address 1, Bungtown Road
City Cold Spring Harbor
State/province NY
ZIP/Postal code 11724
Country USA
Platform ID GPL9141
Series (1)
GSE17943 A Genome-Wide Characterization of MicroRNA Genes in Maize
SRA SRX014795
BioSample SAMN00006976

Supplementary file Size Download File type/resource
GSM448856_zma_seedling.trimmed.fa.gz 96.8 Mb (ftp)(http) FA
SRA Run SelectorHelp
Processed data provided as supplementary file
Raw data are available in SRA

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