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Series GSE55732 Query DataSets for GSE55732
Status Public on Mar 03, 2015
Title Hematopoietic database: including HSCs, progenitors and effector cells
Sample organism Mus musculus
Experiment type Expression profiling by array
Third-party reanalysis
Summary Collection of adult mouse expression profiling covering main types of hematopoietic cells
Aiming to identify HSC-specific genes, we have compiled 131 affymetrix MG430 2.0 arrays and re-processed data of third-party that were curated and quality-assured. This collection was built to include numerous progenitors’ subpopulations and balanced representation of major myeloid- and lymphoid cells. Result provided validated identification of genes that are highly specific to HSCs within the hematopoietic system. This dataset also enable direct identification of specific-genes for the other cell types represented.
 
Overall design Gene expression profiling of covering major hematoppietic and immune cells in the C57Bl/6 mouse. This dataset include 131 arrays that include 34 distinct populations (some with both naïve and activated states). We have included many progenitors subtypes and kept a balance between the myeloid and the lymphoid branches of the hematopoietic system (while there is an access of published arrays on lymphoid subtypes).

The 131 Samples below are 131 third-party reanalyzed data from the following studies, available in the GEO database as;
GSE4142, GSE6506, GSE6681, GSE6875, GSE7302, GSE7764, GSE8407, GSE9717, GSE9810, GSE9954, GSE10246, GSE10627, GSE11110, GSE11982, GSE12001, GSE12075, GSE12581, GSE20244, GSE34723
All were compiled together and we have normalized them to obtain a balanced-representation.

*The complete dataset representing 131 third-party reanalyzed samples (re-processed using gcRMA), is linked below as a supplementary file.
 
Contributor(s) Gazit R, Rossi DJ
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Mar 10, 2014
Last update date Mar 03, 2015
Contact name Roi Gazit
Organization name Ben-Gurion University of the Negev
Department Shraga Segal dept of Microbiology Immunology and Genetics
Lab Gazit Roi
Street address POB 653
City Be'er-Sheva
ZIP/Postal code 84105
Country Israel
 
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BioProject PRJNA240837

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55732_complete_data.txt.gz 30.7 Mb (ftp)(http) TXT
Processed data are available on Series record
Raw data not applicable for this record

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