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Series GSE47561 Query DataSets for GSE47561
Status Public on Jun 01, 2013
Title Renormalised expression data from 1570 breast cancer related samples
Sample organism Homo sapiens
Experiment type Third-party reanalysis
Expression profiling by array
Summary An integration of several studies normalized to enable consistent cross-study comparisons and enrichment of the less frequent breast cancer types, enabling detection of new potential cancer driver genes.
 
Overall design Raw Affymetrix CEL files were retrieved from the series GSE2034 GSE11121 GSE20194 GSE1456 GSE2603 GSE6532 GSE20437 GSE1561 GSE7390 GSE5847. Samples were then filtered with a three stage quality control resulting in the final dataset. These were subjected to RMA normalization and then placed on a log2 scale. Samples were stratified by levels of MYC expression with the top quartile defined as High and the bottom quartile defined as Low.
 
Contributor(s) Ur-Rehman S
Citation(s) 23756628
Submission date May 31, 2013
Last update date Jun 16, 2013
Contact name Marketa Zvelebil
E-mail(s) Marketa.Zvelebil@icr.ac.uk
Organization name The Institute of Cancer Research
Street address 237 Fulham Road
City London
ZIP/Postal code SW3 6JB
Country United Kingdom
 
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BioProject PRJNA206464

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Supplementary file Size Download File type/resource
GSE47561_log2_RMA_renormalized_data.txt.gz 111.8 Mb (ftp)(http) TXT
GSE47561_sample_characteristics.txt.gz 6.6 Kb (ftp)(http) TXT
Raw data provided as supplementary file
Processed data are available on Series record

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