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Series GSE29423 Query DataSets for GSE29423
Status Public on May 01, 2020
Title Transcriptome analysis of light-utilizing Strain IMCC1322, a member of SAR116 group bacteria
Organism Candidatus Puniceispirillum marinum IMCC1322
Experiment type Expression profiling by high throughput sequencing
Summary The purpose of this study is to elucidate the proteorhodopsin function based on the genome of strain IMCC1322 which was cultivated species of SAR116 from East Sea of Korea. Light-enhanced photoheterotrophy of strain IMCC1322 is interrogated by the transcriptomics of IMCC1322 once the appropriate phenotypic characteristics are revealed by cultivation and polyphasic studies. Transcriptome revealed that green light (max. wavelength =522nm) drives metabolism and cessation of bacterial aging of IMCC1322. Here we report the mRNA profiling of IMCC1322 which is the first effort to the biogeochemistry of light-utilizing SAR116 group in the ocean.
 
Overall design Examination of 6 different mRNA sampled from dark/light/diel cultures of IMCC1322 from 3 and 6 days post inoculation
 
Contributor(s) Oh H, Jung W, Yu H, Kim Y, Cho J
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Submission date May 20, 2011
Last update date May 01, 2020
Contact name Hyun-Myung Oh
E-mail(s) marinebio@pknu.ac.kr
Phone +82-51-629-6869
Organization name Pukyong National University
Department Marine Bio-Cnvergence Science
Lab Marine Genomics & Biotechnology Lab
Street address Yongdang Campus, Sinseonro 365 Namgu
City Busan
State/province South Korea
ZIP/Postal code 608-739
Country South Korea
 
Platforms (1)
GPL13628 Illumina Genome Analyzer (Candidatus Puniceispirillum marinum IMCC1322)
Samples (6)
GSM727609 Dark (Day 3)
GSM727610 Light (Day 3)
GSM727611 Diel Cycle (Day 3)
Relations
SRA SRP006818
BioProject PRJNA141609

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE29423_RAW.tar 2.7 Gb (http)(custom) TAR (of BAI, BAM)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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