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Series GSE183536 Query DataSets for GSE183536
Status Public on Dec 01, 2021
Title Reduced representation bisulfite sequencing (RRBS) profiling of ER-Hoxa9-Lys-GFP cells over myeloid differentiation program
Organism Mus musculus
Experiment type Methylation profiling by high throughput sequencing
Summary Data reveal epigenome-wide trends associated with progression from the GMP-like state to the neutrophil-like state
 
Overall design ER-Hoxa9 cells cultured with estradiol, 120 hours without estradiol, or with estradiol after pre-treatment with four different durations of estradiol withdrawal
 
Contributor(s) Blanco A
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Submission date Sep 06, 2021
Last update date Dec 03, 2021
Contact name Andres Blanco
E-mail(s) ablanco@vet.upenn.edu
Organization name University of Pennsylvania
Department Biomedical Sciences
Lab Blanco Lab
Street address 380 S. University Avenue, Hill Pavillion Room 414
City Philadelphia
State/province PA
ZIP/Postal code 19104
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (11)
GSM5560052 RRBS ER-Hoxa9-Lys-GFP (+) E2 (untreated)
GSM5560053 RRBS ER-Hoxa9-Lys-GFP (-) E2 24h Rep 1
GSM5560054 RRBS ER-Hoxa9-Lys-GFP (-) E2 40h Rep 1
This SubSeries is part of SuperSeries:
GSE183550 Chromatin state barriers enforce an irreversible mammalian cell fate decision
Relations
BioProject PRJNA761198
SRA SRP335909

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE183536_RAW.tar 118.8 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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